Variant report

Variant	rs62307853
Chromosome Location	chr4:93490184-93490185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1026754	0.84[EUR][1000 genomes]
rs11724455	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11727401	1.00[EUR][1000 genomes]
rs11730247	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730343	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733785	1.00[EUR][1000 genomes]
rs11734482	0.84[EUR][1000 genomes]
rs11734654	0.84[EUR][1000 genomes]
rs11932549	0.94[ASN][1000 genomes]
rs11933444	0.97[ASN][1000 genomes]
rs11934085	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12640345	0.84[EUR][1000 genomes]
rs12643613	0.84[EUR][1000 genomes]
rs12645042	0.84[EUR][1000 genomes]
rs12646471	0.84[EUR][1000 genomes]
rs12647044	0.84[EUR][1000 genomes]
rs1376115	0.94[ASN][1000 genomes]
rs1376116	0.94[ASN][1000 genomes]
rs17019538	0.94[ASN][1000 genomes]
rs17019545	0.97[EUR][1000 genomes]
rs17019568	0.94[ASN][1000 genomes]
rs17019701	0.87[EUR][1000 genomes]
rs17019712	0.82[EUR][1000 genomes]
rs34612115	0.84[EUR][1000 genomes]
rs35806279	0.84[EUR][1000 genomes]
rs4142874	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4471526	0.97[EUR][1000 genomes]
rs62307822	0.97[EUR][1000 genomes]
rs62307823	0.97[EUR][1000 genomes]
rs62307844	0.96[ASN][1000 genomes]
rs62307845	0.95[ASN][1000 genomes]
rs62307849	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307852	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307854	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307855	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62307856	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62307857	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62307858	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307877	0.87[EUR][1000 genomes]
rs62307878	0.84[EUR][1000 genomes]
rs62307879	0.84[EUR][1000 genomes]
rs62307880	0.84[EUR][1000 genomes]
rs62307881	0.84[EUR][1000 genomes]
rs62307882	0.84[EUR][1000 genomes]
rs62307883	0.84[EUR][1000 genomes]
rs62307884	0.84[EUR][1000 genomes]
rs62307885	0.84[EUR][1000 genomes]
rs62307886	0.84[EUR][1000 genomes]
rs62307887	0.84[EUR][1000 genomes]
rs62307888	0.84[EUR][1000 genomes]
rs62307889	0.84[EUR][1000 genomes]
rs62307890	0.84[EUR][1000 genomes]
rs62307891	0.84[EUR][1000 genomes]
rs62307892	0.84[EUR][1000 genomes]
rs62307893	0.84[EUR][1000 genomes]
rs62307894	0.84[EUR][1000 genomes]
rs62307895	0.84[EUR][1000 genomes]
rs62307896	0.84[EUR][1000 genomes]
rs62307897	0.84[EUR][1000 genomes]
rs62307898	0.84[EUR][1000 genomes]
rs62307899	0.84[EUR][1000 genomes]
rs62307900	0.84[EUR][1000 genomes]
rs62307901	0.84[EUR][1000 genomes]
rs62307917	0.84[EUR][1000 genomes]
rs62307948	0.84[EUR][1000 genomes]
rs62307949	0.84[EUR][1000 genomes]
rs62307950	0.84[EUR][1000 genomes]
rs62307952	0.84[EUR][1000 genomes]
rs62307953	0.84[EUR][1000 genomes]
rs62307954	0.84[EUR][1000 genomes]
rs62307955	0.84[EUR][1000 genomes]
rs62307956	0.84[EUR][1000 genomes]
rs62307957	0.84[EUR][1000 genomes]
rs62307958	0.84[EUR][1000 genomes]
rs62307959	0.84[EUR][1000 genomes]
rs62309160	0.84[EUR][1000 genomes]
rs62309161	0.84[EUR][1000 genomes]
rs62309162	0.84[EUR][1000 genomes]
rs62309164	0.84[EUR][1000 genomes]
rs62309165	0.84[EUR][1000 genomes]
rs62309166	0.84[EUR][1000 genomes]
rs62309167	0.84[EUR][1000 genomes]
rs62309168	0.84[EUR][1000 genomes]
rs62309169	0.84[EUR][1000 genomes]
rs62309170	0.84[EUR][1000 genomes]
rs62309171	0.84[EUR][1000 genomes]
rs62309172	0.84[EUR][1000 genomes]
rs62309173	0.84[EUR][1000 genomes]
rs62309174	0.84[EUR][1000 genomes]
rs62309175	0.84[EUR][1000 genomes]
rs62309176	0.84[EUR][1000 genomes]
rs62309177	0.84[EUR][1000 genomes]
rs62309179	0.84[EUR][1000 genomes]
rs62310083	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62310137	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62310139	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62310141	0.84[EUR][1000 genomes]
rs62310143	0.87[EUR][1000 genomes]
rs62310144	0.82[EUR][1000 genomes]
rs62310145	0.87[EUR][1000 genomes]
rs62310146	0.89[EUR][1000 genomes]
rs62310147	0.84[EUR][1000 genomes]
rs62310148	0.89[EUR][1000 genomes]
rs62310149	0.87[EUR][1000 genomes]
rs62310183	0.82[EUR][1000 genomes]
rs6532375	0.97[ASN][1000 genomes]
rs6815704	0.97[ASN][1000 genomes]
rs6816638	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851161	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6851220	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7658848	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659896	0.95[ASN][1000 genomes]
rs7667109	0.94[ASN][1000 genomes]
rs7670866	0.87[EUR][1000 genomes]
rs7670984	0.87[EUR][1000 genomes]
rs7673465	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675247	0.84[EUR][1000 genomes]
rs7675621	0.84[EUR][1000 genomes]
rs7677052	0.97[ASN][1000 genomes]
rs7683918	0.87[EUR][1000 genomes]
rs7686758	0.94[ASN][1000 genomes]
rs7687076	0.89[EUR][1000 genomes]
rs7692067	0.84[EUR][1000 genomes]
rs7699810	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7700132	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948712	chr4:93007985-93740409	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005500	chr4:93359923-93590452	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv537184	chr4:93359923-93590452	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv879605	chr4:93376231-93740409	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1006957	chr4:93389054-93511561	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1013199	chr4:93395509-93511052	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv879607	chr4:93434872-93515166	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1014431	chr4:93464326-93618241	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv537185	chr4:93464326-93618241	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv879608	chr4:93480717-93612903	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv879609	chr4:93489287-93596167	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93478000-93493600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:93488800-93497400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:93489800-93490200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:93490000-93490600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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