Variant report

Variant	rs62307856
Chromosome Location	chr4:93493340-93493341
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11724455	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11727401	0.90[EUR][1000 genomes]
rs11730247	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730343	0.90[EUR][1000 genomes]
rs11733785	0.90[EUR][1000 genomes]
rs11932549	0.94[ASN][1000 genomes]
rs11933444	0.97[ASN][1000 genomes]
rs11934085	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1376115	0.94[ASN][1000 genomes]
rs1376116	0.94[ASN][1000 genomes]
rs17019538	0.94[ASN][1000 genomes]
rs17019545	0.88[EUR][1000 genomes]
rs17019568	0.94[ASN][1000 genomes]
rs4142874	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4471526	0.88[EUR][1000 genomes]
rs62307822	0.88[EUR][1000 genomes]
rs62307823	0.88[EUR][1000 genomes]
rs62307844	0.96[ASN][1000 genomes]
rs62307845	0.95[ASN][1000 genomes]
rs62307849	0.90[EUR][1000 genomes]
rs62307852	0.90[EUR][1000 genomes]
rs62307853	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62307854	0.90[EUR][1000 genomes]
rs62307855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62307857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62307858	0.90[EUR][1000 genomes]
rs62310083	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62310137	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62310139	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62310141	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62310144	0.86[AMR][1000 genomes]
rs62310146	0.81[EUR][1000 genomes]
rs62310147	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62310148	0.81[EUR][1000 genomes]
rs6532375	0.97[ASN][1000 genomes]
rs6815704	0.97[ASN][1000 genomes]
rs6816638	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6851220	0.90[EUR][1000 genomes]
rs7658848	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659896	0.95[ASN][1000 genomes]
rs7667109	0.94[ASN][1000 genomes]
rs7673465	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677052	0.97[ASN][1000 genomes]
rs7686758	0.94[ASN][1000 genomes]
rs7687076	0.81[EUR][1000 genomes]
rs7699810	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7700132	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948712	chr4:93007985-93740409	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005500	chr4:93359923-93590452	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv537184	chr4:93359923-93590452	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv879605	chr4:93376231-93740409	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1006957	chr4:93389054-93511561	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1013199	chr4:93395509-93511052	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv879607	chr4:93434872-93515166	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1014431	chr4:93464326-93618241	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv537185	chr4:93464326-93618241	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv879608	chr4:93480717-93612903	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv879609	chr4:93489287-93596167	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93478000-93493600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:93488800-93497400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:93490400-93493800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:93490600-93494000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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