Variant report

Variant	rs62308744
Chromosome Location	chr4:89782561-89782562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:89774983..89777193-chr4:89781761..89783267,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10019681	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10021465	0.82[ASN][1000 genomes]
rs10028589	0.82[AMR][1000 genomes]
rs10033824	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12648534	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13328032	0.82[ASN][1000 genomes]
rs28459962	0.93[EUR][1000 genomes]
rs28529050	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28542213	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4693971	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4693973	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4693975	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4693976	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58281712	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62308745	0.81[EUR][1000 genomes]
rs62308746	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62310476	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7668636	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7687539	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7695732	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89768800-89789400	Weak transcription	Fetal Intestine Small	intestine
2	chr4:89771000-89803200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:89773600-89784200	Weak transcription	Gastric	stomach
4	chr4:89778400-89782800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:89780800-89786000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:89780800-89786000	Weak transcription	NHDF-Ad	bronchial
7	chr4:89780800-89786000	Weak transcription	Osteobl	bone
8	chr4:89780800-89800600	Weak transcription	Pancreas	Pancrea
9	chr4:89781000-89788200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:89781600-89782600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr4:89781600-89783800	Enhancers	Colon Smooth Muscle	Colon
12	chr4:89781800-89782600	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr4:89781800-89786400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:89782000-89784600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:89782000-89786600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:89782000-89786800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:89782200-89784000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:89782200-89784200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:89782200-89784600	Weak transcription	Fetal Lung	lung
20	chr4:89782200-89786000	Weak transcription	NHLF	lung
21	chr4:89782200-89786800	Weak transcription	Placenta	Placenta
22	chr4:89782400-89784200	Weak transcription	Fetal Stomach	stomach
23	chr4:89782400-89801200	Weak transcription	Ovary	ovary

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