Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10019681	0.99[EUR][1000 genomes]
rs10028589	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10033824	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12648534	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13328032	0.97[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28459962	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28529050	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28542213	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3806788	0.80[ASN][1000 genomes]
rs4693971	0.82[EUR][1000 genomes]
rs4693973	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4693975	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4693976	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4693977	0.86[EUR][1000 genomes]
rs58281712	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62308744	0.81[EUR][1000 genomes]
rs62308746	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62310476	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6835019	0.91[EUR][1000 genomes]
rs7660385	0.87[EUR][1000 genomes]
rs7668636	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7687539	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7695732	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv998651	chr4:89800245-89933445	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537175	chr4:89800245-89933445	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89771000-89803200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:89798800-89802800	Enhancers	HepG2	liver
3	chr4:89800000-89802800	Enhancers	Fetal Intestine Small	intestine
4	chr4:89800200-89802400	Enhancers	Fetal Intestine Large	intestine
5	chr4:89800600-89801800	Enhancers	Duodenum Mucosa	Duodenum
6	chr4:89800600-89801800	Enhancers	HSMMtube	muscle
7	chr4:89800600-89802600	Enhancers	Fetal Muscle Leg	muscle
8	chr4:89800600-89802600	Enhancers	Pancreas	Pancrea
9	chr4:89800800-89802400	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr4:89800800-89802400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr4:89800800-89802600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:89801000-89803400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:89801200-89801400	Enhancers	Osteobl	bone
14	chr4:89801200-89802400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:89801200-89802600	Enhancers	Ovary	ovary
16	chr4:89801200-89802800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:89801200-89802800	Enhancers	Placenta	Placenta

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