Variant report

Variant	rs62310675
Chromosome Location	chr4:93422729-93422730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:93404272..93404961-chr4:93422474..93423086,2	MCF-7	breast:
2	chr4:93404272..93405260-chr4:93422586..93423310,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12645728	0.91[EUR][1000 genomes]
rs12647190	0.93[EUR][1000 genomes]
rs12647297	0.94[EUR][1000 genomes]
rs17019374	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17019377	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17239736	0.98[ASN][1000 genomes]
rs17318246	0.97[ASN][1000 genomes]
rs17318607	0.80[ASN][1000 genomes]
rs2044803	0.90[ASN][1000 genomes]
rs2122524	0.90[ASN][1000 genomes]
rs28429849	0.99[ASN][1000 genomes]
rs28527416	0.98[ASN][1000 genomes]
rs4482730	0.89[EUR][1000 genomes]
rs4522831	0.80[EUR][1000 genomes]
rs4597787	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4629410	0.80[EUR][1000 genomes]
rs62307816	0.80[ASN][1000 genomes]
rs62310663	0.93[EUR][1000 genomes]
rs62310664	0.93[EUR][1000 genomes]
rs62310673	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62310674	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62310679	0.99[ASN][1000 genomes]
rs62310680	0.97[ASN][1000 genomes]
rs62310698	0.90[ASN][1000 genomes]
rs62312215	0.80[EUR][1000 genomes]
rs62312216	0.80[EUR][1000 genomes]
rs62312217	0.80[EUR][1000 genomes]
rs62312218	0.80[EUR][1000 genomes]
rs62312220	0.80[EUR][1000 genomes]
rs62312221	0.80[EUR][1000 genomes]
rs62312224	0.80[EUR][1000 genomes]
rs62312226	0.93[EUR][1000 genomes]
rs62312230	0.92[EUR][1000 genomes]
rs6532373	0.97[ASN][1000 genomes]
rs72661913	0.93[EUR][1000 genomes]
rs72661916	0.90[EUR][1000 genomes]
rs72661921	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72661929	0.95[ASN][1000 genomes]
rs7659338	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948712	chr4:93007985-93740409	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1000700	chr4:93270083-93425831	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv537182	chr4:93270083-93425831	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv997925	chr4:93270083-93464386	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv537183	chr4:93270083-93464386	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1005500	chr4:93359923-93590452	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv537184	chr4:93359923-93590452	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv879605	chr4:93376231-93740409	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1006957	chr4:93389054-93511561	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv879606	chr4:93391251-93479275	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1013199	chr4:93395509-93511052	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93414800-93434400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:93420800-93423000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:93420800-93429800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:93421000-93422800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:93421000-93424000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:93421400-93423000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:93421600-93422800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:93421600-93428800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:93421800-93422800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr4:93421800-93423600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:93422000-93422800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:93422200-93423000	Enhancers	Brain Anterior Caudate	brain
13	chr4:93422400-93422800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:93422600-93427600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:93422600-93429600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links