Variant report

Variant	rs62313058
Chromosome Location	chr4:91713730-91713731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11097265	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17017577	0.92[AMR][1000 genomes]
rs17017712	0.89[ASN][1000 genomes]
rs17017713	0.87[ASN][1000 genomes]
rs17017714	0.87[ASN][1000 genomes]
rs17017719	0.87[ASN][1000 genomes]
rs2123954	0.92[AMR][1000 genomes]
rs2271591	0.92[AMR][1000 genomes]
rs3733453	0.81[AMR][1000 genomes]
rs3733455	0.81[AMR][1000 genomes]
rs62309559	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62311062	0.89[ASN][1000 genomes]
rs62311065	0.89[ASN][1000 genomes]
rs62311066	0.89[ASN][1000 genomes]
rs62311068	0.89[ASN][1000 genomes]
rs62311069	0.89[ASN][1000 genomes]
rs62311070	0.89[ASN][1000 genomes]
rs62311074	0.89[ASN][1000 genomes]
rs62311075	0.87[ASN][1000 genomes]
rs62311109	0.87[ASN][1000 genomes]
rs62311110	0.87[ASN][1000 genomes]
rs62311112	0.86[ASN][1000 genomes]
rs62312977	0.84[AMR][1000 genomes]
rs62312980	0.84[AMR][1000 genomes]
rs62312983	0.86[AMR][1000 genomes]
rs62312984	0.86[AMR][1000 genomes]
rs62312985	0.86[AMR][1000 genomes]
rs62312986	0.86[AMR][1000 genomes]
rs62312987	0.86[AMR][1000 genomes]
rs62312992	0.86[AMR][1000 genomes]
rs62312994	0.86[AMR][1000 genomes]
rs62312997	0.86[AMR][1000 genomes]
rs62313022	0.92[AMR][1000 genomes]
rs62313025	0.92[AMR][1000 genomes]
rs62313055	0.92[AMR][1000 genomes]
rs62313056	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62313057	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62314446	0.81[AMR][1000 genomes]
rs6841566	0.84[AMR][1000 genomes]
rs720327	0.92[AMR][1000 genomes]
rs72663610	0.92[AMR][1000 genomes]
rs72663613	0.92[AMR][1000 genomes]
rs72663648	0.87[ASN][1000 genomes]
rs72663649	0.87[ASN][1000 genomes]
rs7681018	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879552	chr4:91691313-91729462	Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879554	chr4:91692287-91731886	Enhancers Weak transcription Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91713000-91714200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:91713600-91714200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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