Variant report

Variant	rs62317677
Chromosome Location	chr4:106693508-106693509
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62320287	1.00[AFR][1000 genomes]
rs62320291	0.83[AMR][1000 genomes]
rs62320296	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000947	chr4:106651153-106701679	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106661600-106696800	Weak transcription	Fetal Intestine Small	intestine
2	chr4:106685400-106700000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:106686400-106696800	Weak transcription	Fetal Stomach	stomach
4	chr4:106687000-106698400	Weak transcription	Fetal Lung	lung
5	chr4:106687400-106696800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:106687600-106696800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:106687600-106697200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:106687800-106699600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:106688400-106697200	Weak transcription	NHDF-Ad	bronchial
10	chr4:106688400-106708200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:106689000-106698800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:106689200-106703600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:106689400-106706000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:106690800-106706000	Weak transcription	Fetal Heart	heart
15	chr4:106691400-106706400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:106692400-106729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:106693200-106693600	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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