Variant report

Variant	rs62320296
Chromosome Location	chr4:106617250-106617251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106614729..106617409-chr4:106629462..106630998,2	MCF-7	breast:
2	chr4:106616699..106623307-chr4:106623731..106631342,11	K562	blood:

Variant related genes	Relation type
ENSG00000138785	Chromatin interaction
ENSG00000138780	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62317677	0.83[AMR][1000 genomes]
rs62320287	0.83[AMR][1000 genomes]
rs62320291	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106587800-106629000	Weak transcription	Lung	lung
2	chr4:106600400-106628600	Weak transcription	Colonic Mucosa	Colon
3	chr4:106600600-106628400	Weak transcription	Stomach Mucosa	stomach
4	chr4:106601200-106628400	Weak transcription	Psoas Muscle	Psoas
5	chr4:106602000-106618600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:106602200-106621600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:106602200-106629200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:106602400-106618400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:106602400-106621600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr4:106602400-106628600	Weak transcription	Right Ventricle	heart
11	chr4:106602600-106620800	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr4:106602600-106621200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:106602600-106621800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:106602600-106622200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr4:106602600-106628400	Weak transcription	Fetal Heart	heart
16	chr4:106602600-106629200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:106602800-106619200	Strong transcription	Liver	Liver
18	chr4:106603000-106620200	Strong transcription	Placenta	Placenta
19	chr4:106603000-106620400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr4:106603000-106620400	Strong transcription	Dnd41	blood
21	chr4:106603000-106621000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:106604200-106618600	Weak transcription	Spleen	Spleen
23	chr4:106604400-106629200	Weak transcription	Esophagus	oesophagus
24	chr4:106604400-106629200	Weak transcription	Gastric	stomach
25	chr4:106605400-106621600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:106606600-106620000	Strong transcription	Fetal Thymus	thymus
27	chr4:106606600-106628200	Weak transcription	Hela-S3	cervix
28	chr4:106607000-106617400	Strong transcription	Fetal Intestine Large	intestine
29	chr4:106607600-106626400	Weak transcription	Small Intestine	intestine
30	chr4:106609000-106620600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:106609200-106620000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr4:106609200-106621600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr4:106609200-106625200	Strong transcription	HSMM	muscle
34	chr4:106609400-106621400	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr4:106609600-106621200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:106610400-106619200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr4:106610400-106628800	Weak transcription	Fetal Kidney	kidney
38	chr4:106610600-106619400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:106610600-106628200	Weak transcription	Fetal Brain Male	brain
40	chr4:106610600-106628600	Weak transcription	A549	lung
41	chr4:106610800-106621200	Weak transcription	Brain Substantia Nigra	brain
42	chr4:106610800-106628600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr4:106611000-106619800	Weak transcription	Left Ventricle	heart
44	chr4:106611400-106617400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:106611400-106618400	Weak transcription	Primary T cells from cord blood	blood
46	chr4:106611400-106623600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:106611400-106627600	Weak transcription	HepG2	liver
48	chr4:106611400-106628600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr4:106612400-106617600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr4:106612400-106620200	Strong transcription	Adipose Nuclei	Adipose

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