Variant report

Variant	rs62318656
Chromosome Location	chr4:76481628-76481629
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11734102	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931211	0.83[AMR][1000 genomes]
rs11931530	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11932719	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11944717	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12647915	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17214392	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17214448	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62318653	0.83[ASN][1000 genomes]
rs62318657	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62318658	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62318659	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62320962	0.83[AMR][1000 genomes]
rs6811713	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857229	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76480400-76481800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:76480400-76481800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:76480600-76481800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr4:76480600-76482200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:76480600-76482400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:76480800-76481800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:76480800-76481800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:76481200-76481800	Enhancers	NHEK	skin
9	chr4:76481400-76481800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:76481400-76481800	Enhancers	HMEC	breast
11	chr4:76481400-76482200	Weak transcription	Placenta	Placenta
12	chr4:76481400-76486800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:76481600-76482000	Enhancers	GM12878-XiMat	blood
14	chr4:76481600-76482200	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links