Variant report

Variant	rs6857229
Chromosome Location	chr4:76491568-76491569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11734102	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11931211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11931530	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11932719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11944717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17214392	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17214448	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62318656	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62318657	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62318658	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62318659	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62320962	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6811713	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76487400-76498400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:76488800-76493600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:76490600-76491800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:76490600-76491800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr4:76490800-76493400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:76491000-76491600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:76491200-76491600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr4:76491200-76491800	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:76491200-76493000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links