Variant report

Variant	rs62319411
Chromosome Location	chr4:125304778-125304779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs1078357	0.86[AMR][1000 genomes]
rs1078358	0.86[AMR][1000 genomes]
rs1159231	0.86[AMR][1000 genomes]
rs12641347	0.86[AMR][1000 genomes]
rs12643266	0.86[AMR][1000 genomes]
rs12643717	0.86[AMR][1000 genomes]
rs12644360	0.86[AMR][1000 genomes]
rs12644739	0.86[AMR][1000 genomes]
rs12645137	0.86[AMR][1000 genomes]
rs12645203	0.86[AMR][1000 genomes]
rs12645206	0.93[AMR][1000 genomes]
rs12645755	0.86[AMR][1000 genomes]
rs12647782	0.86[AMR][1000 genomes]
rs12648465	0.86[AMR][1000 genomes]
rs1379379	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1520323	0.86[AMR][1000 genomes]
rs16997793	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005185	0.86[AMR][1000 genomes]
rs2125001	0.86[AMR][1000 genomes]
rs2893075	0.93[AMR][1000 genomes]
rs34300106	0.86[AMR][1000 genomes]
rs4292346	0.86[AMR][1000 genomes]
rs4413420	0.93[AMR][1000 genomes]
rs62319361	0.93[AMR][1000 genomes]
rs62319362	0.87[AMR][1000 genomes]
rs62319406	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62319410	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62319414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62319494	0.86[AMR][1000 genomes]
rs62319495	0.86[AMR][1000 genomes]
rs62319496	0.86[AMR][1000 genomes]
rs62319499	0.86[AMR][1000 genomes]
rs62319500	0.86[AMR][1000 genomes]
rs62319501	0.86[AMR][1000 genomes]
rs62319502	0.86[AMR][1000 genomes]
rs62319503	0.86[AMR][1000 genomes]
rs62319504	0.86[AMR][1000 genomes]
rs62319506	0.86[AMR][1000 genomes]
rs62319508	0.86[AMR][1000 genomes]
rs62319509	0.86[AMR][1000 genomes]
rs62319510	0.86[AMR][1000 genomes]
rs62319511	0.86[AMR][1000 genomes]
rs62319512	0.86[AMR][1000 genomes]
rs62319513	0.86[AMR][1000 genomes]
rs62319514	0.86[AMR][1000 genomes]
rs62319515	0.86[AMR][1000 genomes]
rs62319516	0.86[AMR][1000 genomes]
rs62319517	0.86[AMR][1000 genomes]
rs62319518	0.86[AMR][1000 genomes]
rs62319519	0.86[AMR][1000 genomes]
rs62319520	0.86[AMR][1000 genomes]
rs62320368	0.86[AMR][1000 genomes]
rs62320369	0.86[AMR][1000 genomes]
rs62320371	0.86[AMR][1000 genomes]
rs62320372	0.86[AMR][1000 genomes]
rs62320373	0.86[AMR][1000 genomes]
rs62320374	0.86[AMR][1000 genomes]
rs62320375	0.86[AMR][1000 genomes]
rs62320376	0.86[AMR][1000 genomes]
rs62320377	0.86[AMR][1000 genomes]
rs62320387	0.86[AMR][1000 genomes]
rs62320450	0.86[AMR][1000 genomes]
rs62320455	0.86[AMR][1000 genomes]
rs62320456	0.86[AMR][1000 genomes]
rs62320458	0.86[AMR][1000 genomes]
rs62320664	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320665	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320677	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320679	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320680	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320685	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62320686	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62320687	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62320689	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62320691	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62320875	0.86[AMR][1000 genomes]
rs62320892	0.86[AMR][1000 genomes]
rs62320899	0.86[AMR][1000 genomes]
rs62320901	0.86[AMR][1000 genomes]
rs62320904	0.86[AMR][1000 genomes]
rs62320905	0.86[AMR][1000 genomes]
rs62320906	0.86[AMR][1000 genomes]
rs62320912	0.86[AMR][1000 genomes]
rs62320950	0.86[AMR][1000 genomes]
rs62320954	0.86[AMR][1000 genomes]
rs62321960	0.86[AMR][1000 genomes]
rs62321961	0.86[AMR][1000 genomes]
rs62321962	0.86[AMR][1000 genomes]
rs62321964	0.86[AMR][1000 genomes]
rs62321965	0.86[AMR][1000 genomes]
rs62321967	0.86[AMR][1000 genomes]
rs62321968	0.86[AMR][1000 genomes]
rs62321969	0.86[AMR][1000 genomes]
rs62321971	0.86[AMR][1000 genomes]
rs62321973	0.86[AMR][1000 genomes]
rs62321974	0.86[AMR][1000 genomes]
rs62321999	0.86[AMR][1000 genomes]
rs62322000	0.86[AMR][1000 genomes]
rs62322001	0.86[AMR][1000 genomes]
rs62322002	0.86[AMR][1000 genomes]
rs62322003	0.86[AMR][1000 genomes]
rs62322004	0.86[AMR][1000 genomes]
rs62322006	0.86[AMR][1000 genomes]
rs62322007	0.86[AMR][1000 genomes]
rs62322008	0.86[AMR][1000 genomes]
rs62322009	0.86[AMR][1000 genomes]
rs62322010	0.86[AMR][1000 genomes]
rs62322011	0.86[AMR][1000 genomes]
rs62322012	0.86[AMR][1000 genomes]
rs62322013	0.86[AMR][1000 genomes]
rs62322014	0.86[AMR][1000 genomes]
rs62322015	0.86[AMR][1000 genomes]
rs62322016	0.86[AMR][1000 genomes]
rs62322017	0.86[AMR][1000 genomes]
rs62322024	0.93[AMR][1000 genomes]
rs62322025	0.93[AMR][1000 genomes]
rs72674763	0.86[AMR][1000 genomes]
rs72674766	0.86[AMR][1000 genomes]
rs72674768	0.86[AMR][1000 genomes]
rs72674769	0.86[AMR][1000 genomes]
rs72674773	0.86[AMR][1000 genomes]
rs72674774	0.86[AMR][1000 genomes]
rs72674778	0.86[AMR][1000 genomes]
rs72674780	0.86[AMR][1000 genomes]
rs72674782	0.86[AMR][1000 genomes]
rs72674794	0.86[AMR][1000 genomes]
rs72676607	0.86[AMR][1000 genomes]
rs72676614	0.86[AMR][1000 genomes]
rs72676649	0.86[AMR][1000 genomes]
rs72676653	0.86[AMR][1000 genomes]
rs72676654	0.86[AMR][1000 genomes]
rs72676655	0.86[AMR][1000 genomes]
rs72676661	0.86[AMR][1000 genomes]
rs72676665	0.86[AMR][1000 genomes]
rs72676667	0.86[AMR][1000 genomes]
rs72676668	0.86[AMR][1000 genomes]
rs72676669	0.86[AMR][1000 genomes]
rs72676671	0.86[AMR][1000 genomes]
rs72676672	0.86[AMR][1000 genomes]
rs72678434	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678451	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678473	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694231	0.86[AMR][1000 genomes]
rs902930	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999775	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv432624	chr4:125013395-125367740	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998024	chr4:125019384-125380876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537241	chr4:125019384-125380876	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv595380	chr4:125265313-125336932	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1011845	chr4:125273444-125325694	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1009362	chr4:125274684-125325694	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv4500	chr4:125291643-125337271	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125304000-125305000	Enhancers	Fetal Lung	lung

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