Variant report

Variant	rs62320679
Chromosome Location	chr4:125333604-125333605
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125331266..125334287-chr4:125337725..125339948,3	MCF-7	breast:
2	chr4:125332025..125334312-chr4:125349004..125351907,3	MCF-7	breast:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1078357	0.81[AMR][1000 genomes]
rs1078358	0.81[AMR][1000 genomes]
rs12641347	0.81[AMR][1000 genomes]
rs12643266	0.81[AMR][1000 genomes]
rs12643717	0.81[AMR][1000 genomes]
rs12644360	0.81[AMR][1000 genomes]
rs12644739	0.81[AMR][1000 genomes]
rs12645137	0.81[AMR][1000 genomes]
rs12645203	0.81[AMR][1000 genomes]
rs12645755	0.81[AMR][1000 genomes]
rs1379379	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1520323	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16997793	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005185	0.81[AMR][1000 genomes]
rs2125001	0.81[AMR][1000 genomes]
rs34300106	0.81[AMR][1000 genomes]
rs4292346	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62319406	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62319410	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62319411	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62319414	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320372	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320373	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320374	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320375	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320376	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320377	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320387	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320450	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320455	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320456	0.81[AMR][1000 genomes]
rs62320458	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320664	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320665	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320677	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320680	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320685	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62320686	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62320687	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62320689	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62320691	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62320875	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320892	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320899	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320901	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320904	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320905	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320906	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320912	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320950	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62320954	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62321960	0.81[AMR][1000 genomes]
rs62321961	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62321962	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62321964	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62321965	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62321967	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62321968	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62321969	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62321971	0.81[AMR][1000 genomes]
rs62321973	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62321974	0.81[AMR][1000 genomes]
rs62321999	0.81[AMR][1000 genomes]
rs62322000	0.81[AMR][1000 genomes]
rs62322001	0.81[AMR][1000 genomes]
rs62322002	0.81[AMR][1000 genomes]
rs62322003	0.81[AMR][1000 genomes]
rs62322004	0.81[AMR][1000 genomes]
rs62322006	0.81[AMR][1000 genomes]
rs62322007	0.81[AMR][1000 genomes]
rs62322008	0.81[AMR][1000 genomes]
rs62322009	0.81[AMR][1000 genomes]
rs62322010	0.81[AMR][1000 genomes]
rs62322011	0.81[AMR][1000 genomes]
rs62322012	0.81[AMR][1000 genomes]
rs62322013	0.81[AMR][1000 genomes]
rs62322014	0.81[AMR][1000 genomes]
rs62322015	0.81[AMR][1000 genomes]
rs62322016	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62322017	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72674782	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72674794	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72676607	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72676614	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72676649	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72676653	0.81[AMR][1000 genomes]
rs72676654	0.81[AMR][1000 genomes]
rs72676655	0.81[AMR][1000 genomes]
rs72676661	0.81[AMR][1000 genomes]
rs72676665	0.81[AMR][1000 genomes]
rs72676667	0.81[AMR][1000 genomes]
rs72676668	0.81[AMR][1000 genomes]
rs72676669	0.81[AMR][1000 genomes]
rs72676671	0.81[AMR][1000 genomes]
rs72676672	0.81[AMR][1000 genomes]
rs72678434	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678451	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678473	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694231	0.81[AMR][1000 genomes]
rs902930	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999775	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv432624	chr4:125013395-125367740	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998024	chr4:125019384-125380876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537241	chr4:125019384-125380876	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv595380	chr4:125265313-125336932	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv4500	chr4:125291643-125337271	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125330400-125334800	Weak transcription	Osteobl	bone
2	chr4:125330600-125335000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:125330600-125335000	Weak transcription	NHLF	lung
4	chr4:125330600-125336200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:125331000-125335000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:125331000-125335400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:125331600-125341000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:125331800-125333800	Weak transcription	NHDF-Ad	bronchial
9	chr4:125331800-125334400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:125332000-125334000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:125332000-125335800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:125332200-125344000	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:125333200-125336600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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