Variant report

Variant	rs62320556
Chromosome Location	chr4:125996254-125996255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17791190	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62320555	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6822861	0.87[EUR][1000 genomes]
rs6851404	0.83[AMR][1000 genomes]
rs7699936	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125995800-125997600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:125996000-125997400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:125996200-125997200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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