Variant report

Variant	rs62320555
Chromosome Location	chr4:125986965-125986966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17789854	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17791190	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4302477	0.97[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62320556	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6812056	0.91[EUR][1000 genomes]
rs6822861	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6840107	0.91[EUR][1000 genomes]
rs6851404	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72922671	0.89[EUR][1000 genomes]
rs7693038	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7699936	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv968053	chr4:125979924-125995803	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125985600-125993400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:125986400-125987800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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