Variant report

Variant	rs7693038
Chromosome Location	chr4:125963767-125963768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17789854	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62320555	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6812056	1.00[EUR][1000 genomes]
rs6822861	0.91[EUR][1000 genomes]
rs6840107	1.00[EUR][1000 genomes]
rs6851404	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72922671	0.98[EUR][1000 genomes]
rs72922689	0.85[EUR][1000 genomes]
rs7699936	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125961600-125964200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125961600-125964400	Enhancers	NHEK	skin
3	chr4:125961800-125964200	Enhancers	HMEC	breast
4	chr4:125962000-125963800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:125962000-125964000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:125962200-125965400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:125963200-125966000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:125963600-125963800	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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