Variant report

Variant	rs17789854
Chromosome Location	chr4:125935704-125935705
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs62320555	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6812056	0.95[EUR][1000 genomes]
rs6822861	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6840107	0.95[EUR][1000 genomes]
rs6851404	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72922671	0.97[EUR][1000 genomes]
rs72922689	0.84[EUR][1000 genomes]
rs7693038	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7699936	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125932800-125939800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:125932800-125940200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:125933000-125939600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:125933000-125939800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:125933000-125949400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:125933200-125937400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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