Variant report

Variant	rs62324286
Chromosome Location	chr4:54122889-54122890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10014030	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11133258	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11724062	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1383981	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1842658	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28832663	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34426398	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4328970	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4864749	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6554091	0.81[EUR][1000 genomes]
rs7655632	0.82[AMR][1000 genomes]
rs7683984	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs900110	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9990771	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9991945	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9998376	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997614	chr4:54086727-54150632	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879013	chr4:54093717-54137228	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54101600-54129400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:54108400-54129600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:54114400-54134400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:54114400-54139600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:54114400-54144000	Weak transcription	Liver	Liver
6	chr4:54114600-54126400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:54114600-54129800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:54114800-54129400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:54114800-54130000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:54117800-54132800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:54119600-54130400	Weak transcription	NHLF	lung
12	chr4:54120600-54123200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:54120600-54124000	Weak transcription	Primary T cells from cord blood	blood
14	chr4:54122200-54139800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:54122600-54127400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:54122800-54123200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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