Variant report

Variant	rs1842658
Chromosome Location	chr4:54155566-54155567
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54149656..54152497-chr4:54155266..54158349,3	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10014030	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11133257	0.83[CEU][hapmap]
rs11133258	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11721940	0.96[CHB][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap];0.86[ASN][1000 genomes]
rs11724062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11724781	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs11725172	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11942132	0.83[ASN][1000 genomes]
rs12715997	0.85[ASN][1000 genomes]
rs13130337	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1383981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1383983	0.83[CEU][hapmap]
rs1481818	0.84[CEU][hapmap]
rs1871826	0.84[CEU][hapmap]
rs2200051	0.80[EUR][1000 genomes]
rs2412403	0.85[ASN][1000 genomes]
rs2412404	0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs28832663	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34426398	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4328970	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4472196	0.83[CEU][hapmap]
rs4571396	0.81[CEU][hapmap]
rs4588514	0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs4864742	0.81[EUR][1000 genomes]
rs4864749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4864752	0.80[ASN][1000 genomes]
rs62324286	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6554071	0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap]
rs6554074	0.83[ASN][1000 genomes]
rs6554078	0.83[ASN][1000 genomes]
rs6554089	0.83[CEU][hapmap]
rs6554091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6554092	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6554093	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6821113	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6852852	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6856562	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6857744	0.81[EUR][1000 genomes]
rs751266	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs7655632	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7657388	0.83[CEU][hapmap]
rs7658384	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7673864	0.82[ASN][1000 genomes]
rs7682970	0.84[CEU][hapmap]
rs7683984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs922748	0.83[CEU][hapmap]
rs9759746	0.83[EUR][1000 genomes]
rs9990771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9991945	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9998376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54140200-54179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:54141000-54155800	Weak transcription	Pancreas	Pancrea
3	chr4:54153200-54164200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:54153200-54172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:54153800-54156800	Weak transcription	Primary B cells from cord blood	blood

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