Variant report

Variant	rs11724781
Chromosome Location	chr4:54141465-54141466
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11133248	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs11724062	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs11725172	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs13117212	0.85[YRI][hapmap]
rs13146499	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1383981	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs17654608	0.92[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1842658	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2412401	0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs28640919	0.81[ASN][1000 genomes]
rs28832663	0.83[EUR][1000 genomes]
rs28876828	0.90[EUR][1000 genomes]
rs34690074	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4394057	0.80[AFR][1000 genomes]
rs4557334	0.83[ASN][1000 genomes]
rs4571396	0.96[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4864737	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4864742	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4864749	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs6554075	0.81[EUR][1000 genomes]
rs6554091	0.84[CEU][hapmap]
rs6554092	0.81[EUR][1000 genomes]
rs6554093	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs6554098	0.84[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6813560	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6820250	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6821328	0.84[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs6821471	0.85[CHB][hapmap]
rs6822933	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs6827392	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs6857744	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs751266	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7672997	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs7675342	0.86[CHB][hapmap]
rs7683984	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs900110	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs9759746	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9990771	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs9998376	0.85[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997614	chr4:54086727-54150632	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763360	chr4:54123894-54153814	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54114400-54144000	Weak transcription	Liver	Liver
2	chr4:54127600-54153000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:54129600-54154600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:54129800-54145200	Weak transcription	Fetal Lung	lung
5	chr4:54130400-54143400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:54130400-54148600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:54130400-54150400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:54130600-54148200	Weak transcription	Fetal Intestine Small	intestine
9	chr4:54131000-54145800	Weak transcription	Primary B cells from cord blood	blood
10	chr4:54133200-54144600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:54134800-54151000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:54134800-54154200	Weak transcription	NHLF	lung
13	chr4:54135000-54145600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:54135000-54145800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:54135000-54151200	Weak transcription	Left Ventricle	heart
16	chr4:54135200-54142600	Weak transcription	GM12878-XiMat	blood
17	chr4:54135200-54144000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:54135200-54148200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:54135200-54151800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:54135200-54154600	Weak transcription	Primary T cells from cord blood	blood
21	chr4:54135400-54146000	Weak transcription	Fetal Stomach	stomach
22	chr4:54135400-54152200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:54135400-54153000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:54140200-54143600	Weak transcription	HSMM	muscle
25	chr4:54140200-54151000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:54140200-54179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr4:54140400-54147200	Weak transcription	Osteobl	bone
28	chr4:54140400-54147600	Weak transcription	NHDF-Ad	bronchial
29	chr4:54140800-54147000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:54140800-54149400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:54141000-54155800	Weak transcription	Pancreas	Pancrea

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