Variant report

Variant	rs34690074
Chromosome Location	chr4:54112355-54112356
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11133248	0.83[EUR][1000 genomes]
rs11721940	0.81[EUR][1000 genomes]
rs11724781	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11942132	0.82[EUR][1000 genomes]
rs13146499	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17654608	0.82[ASN][1000 genomes]
rs2412401	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2412403	0.81[EUR][1000 genomes]
rs2412404	0.81[EUR][1000 genomes]
rs28640919	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28876828	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4394057	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4557334	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4571396	0.82[AFR][1000 genomes]
rs4588514	0.80[EUR][1000 genomes]
rs4864737	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4864742	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6554073	0.83[EUR][1000 genomes]
rs6554074	0.82[EUR][1000 genomes]
rs6554075	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6554078	0.82[EUR][1000 genomes]
rs6820250	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6822933	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6827392	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6857744	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs751266	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7655632	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7672997	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7673864	0.81[EUR][1000 genomes]
rs7687452	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9759746	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997614	chr4:54086727-54150632	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879013	chr4:54093717-54137228	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54101600-54129400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:54106600-54120000	Weak transcription	Gastric	stomach
3	chr4:54108000-54114000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:54108200-54114200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:54108400-54114200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:54108400-54114200	Weak transcription	Pancreas	Pancrea
7	chr4:54108400-54129600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:54111400-54114400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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