Variant report

Variant	rs4571396
Chromosome Location	chr4:54204358-54204359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11724062	0.82[CEU][hapmap]
rs11724781	0.96[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11725172	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs13117212	0.81[YRI][hapmap]
rs13146499	0.82[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1383981	0.81[CEU][hapmap]
rs17654608	0.96[CEU][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1842658	0.81[CEU][hapmap]
rs2412401	0.81[YRI][hapmap]
rs34690074	0.82[AFR][1000 genomes]
rs4864737	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4864742	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4864749	0.81[CEU][hapmap]
rs55655046	0.82[ASN][1000 genomes]
rs6554091	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs6554092	0.86[EUR][1000 genomes]
rs6554093	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs6554098	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6813560	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6820250	0.82[EUR][1000 genomes]
rs6821328	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6821471	0.81[CEU][hapmap]
rs6822933	1.00[YRI][hapmap]
rs6824132	0.82[ASN][1000 genomes]
rs6824299	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6836800	0.81[CEU][hapmap]
rs6857744	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs751266	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7672997	1.00[YRI][hapmap]
rs7675342	0.82[CEU][hapmap]
rs7683984	0.81[CEU][hapmap]
rs900110	0.82[CEU][hapmap]
rs9759746	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9990771	0.82[CEU][hapmap]
rs9998376	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54169800-54216200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:54170600-54230600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:54172600-54215400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:54174200-54212600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:54180000-54212800	Weak transcription	Primary B cells from cord blood	blood
6	chr4:54187800-54212800	Weak transcription	Dnd41	blood
7	chr4:54188200-54213800	Weak transcription	Right Ventricle	heart
8	chr4:54188200-54218200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:54188200-54231200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:54188400-54205600	Weak transcription	Fetal Intestine Small	intestine
11	chr4:54188400-54212800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:54188600-54215400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr4:54189600-54212800	Weak transcription	Osteobl	bone
14	chr4:54189800-54206400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:54190000-54213800	Weak transcription	HUVEC	blood vessel
16	chr4:54192200-54212600	Weak transcription	NHDF-Ad	bronchial
17	chr4:54192200-54212800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:54193800-54206200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:54193800-54212600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:54193800-54213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:54194200-54204800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:54201200-54220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:54201400-54215600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr4:54201600-54213000	Weak transcription	K562	blood
25	chr4:54201800-54215800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr4:54202000-54212800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr4:54202200-54226000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:54202600-54213000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:54203400-54213000	Weak transcription	Primary T cells from cord blood	blood
30	chr4:54204200-54213800	Weak transcription	Gastric	stomach

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