Variant report

Variant	rs6836800
Chromosome Location	chr4:54362150-54362151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11734681	0.84[YRI][hapmap]
rs17082893	0.82[LWK][hapmap];0.84[YRI][hapmap]
rs17654608	0.84[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap]
rs4571396	0.81[CEU][hapmap]
rs6554098	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap]
rs6821328	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap]
rs6821471	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.87[MKK][hapmap];0.82[TSI][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6837934	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7675342	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54327800-54362200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
3	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
4	chr4:54333000-54363600	Weak transcription	Aorta	Aorta
5	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
7	chr4:54343200-54376800	Weak transcription	Brain Anterior Caudate	brain
8	chr4:54343400-54363000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:54343600-54364600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:54346400-54374000	Weak transcription	Right Ventricle	heart
11	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:54348000-54362200	Weak transcription	Fetal Intestine Large	intestine
13	chr4:54355200-54378600	Weak transcription	Fetal Brain Male	brain
14	chr4:54356600-54373400	Weak transcription	Right Atrium	heart
15	chr4:54356800-54362400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:54357200-54362600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:54357400-54363000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:54357600-54362200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:54357600-54362800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:54357800-54362400	Weak transcription	HSMMtube	muscle
21	chr4:54357800-54362800	Weak transcription	Fetal Lung	lung
22	chr4:54357800-54363000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:54357800-54363000	Weak transcription	Adipose Nuclei	Adipose
24	chr4:54357800-54363200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr4:54357800-54363400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:54357800-54363400	Weak transcription	Fetal Stomach	stomach
27	chr4:54357800-54363600	Weak transcription	NHDF-Ad	bronchial
28	chr4:54357800-54363600	Weak transcription	Osteobl	bone
29	chr4:54358600-54362800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:54358600-54365400	Weak transcription	Lung	lung
31	chr4:54359600-54363800	Strong transcription	Duodenum Mucosa	Duodenum
32	chr4:54360000-54362800	Strong transcription	Liver	Liver
33	chr4:54360000-54363000	Strong transcription	Placenta	Placenta
34	chr4:54360600-54362800	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr4:54360600-54363600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr4:54361400-54364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr4:54361800-54364000	Strong transcription	Fetal Intestine Small	intestine
38	chr4:54362000-54362400	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr4:54362000-54362800	Strong transcription	Brain Angular Gyrus	brain
40	chr4:54362000-54363200	Strong transcription	Esophagus	oesophagus
41	chr4:54362000-54363200	Strong transcription	Gastric	stomach
42	chr4:54362000-54363200	Strong transcription	Pancreas	Pancrea
43	chr4:54362000-54366600	Enhancers	Ovary	ovary

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