Variant report

Variant	rs62324902
Chromosome Location	chr4:142039284-142039285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10008705	1.00[EUR][1000 genomes]
rs10519584	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12509440	0.98[EUR][1000 genomes]
rs1395668	1.00[EUR][1000 genomes]
rs1395669	1.00[EUR][1000 genomes]
rs1873370	1.00[EUR][1000 genomes]
rs3913899	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4267811	1.00[EUR][1000 genomes]
rs4386678	1.00[EUR][1000 genomes]
rs4629541	1.00[EUR][1000 genomes]
rs4637487	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4956512	0.96[EUR][1000 genomes]
rs4956513	1.00[EUR][1000 genomes]
rs4956514	1.00[EUR][1000 genomes]
rs62324901	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6537030	1.00[EUR][1000 genomes]
rs6817313	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6826231	1.00[EUR][1000 genomes]
rs6831578	1.00[EUR][1000 genomes]
rs6856997	0.92[EUR][1000 genomes]
rs7658695	0.93[EUR][1000 genomes]
rs7683490	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7697519	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9790672	1.00[EUR][1000 genomes]
rs9790673	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142013000-142040400	Weak transcription	Psoas Muscle	Psoas
2	chr4:142028600-142042400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:142031800-142041800	Weak transcription	Left Ventricle	heart
4	chr4:142037400-142042000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:142037600-142040600	Weak transcription	Ovary	ovary
6	chr4:142038600-142052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:142038800-142039600	ZNF genes & repeats	Fetal Muscle Leg	muscle
8	chr4:142038800-142040000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:142038800-142040400	Weak transcription	Adipose Nuclei	Adipose
10	chr4:142038800-142040800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:142038800-142044400	Enhancers	Fetal Heart	heart
12	chr4:142039000-142039800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr4:142039000-142049200	Weak transcription	Fetal Brain Female	brain
14	chr4:142039200-142039400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:142039200-142039400	Enhancers	Aorta	Aorta
16	chr4:142039200-142039400	ZNF genes & repeats	Fetal Stomach	stomach
17	chr4:142039200-142039400	Enhancers	Right Ventricle	heart
18	chr4:142039200-142039400	Enhancers	Spleen	Spleen
19	chr4:142039200-142039800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:142039200-142039800	Enhancers	K562	blood
21	chr4:142039200-142040400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:142039200-142041000	Enhancers	Placenta	Placenta

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