Variant report

Variant	rs62324939
Chromosome Location	chr4:110716479-110716480
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17538277	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806820	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56877163	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62324893	0.81[ASN][1000 genomes]
rs62324925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62324938	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533461	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv966307	chr4:110708883-110721699	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110715000-110718800	ZNF genes & repeats	HepG2	liver
2	chr4:110715000-110721200	Weak transcription	Pancreas	Pancrea
3	chr4:110716000-110716600	ZNF genes & repeats	Fetal Intestine Small	intestine
4	chr4:110716200-110716600	ZNF genes & repeats	Spleen	Spleen
5	chr4:110716200-110716800	ZNF genes & repeats	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links