Variant report
| Variant | rs6533461 |
|---|---|
| Chromosome Location | chr4:110710107-110710108 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:110693557..110696333-chr4:110710067..110712118,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10020460 | 0.80[AFR][1000 genomes] |
| rs10049635 | 0.80[AFR][1000 genomes] |
| rs10856999 | 0.86[AFR][1000 genomes] |
| rs10857000 | 0.86[AFR][1000 genomes] |
| rs11098045 | 0.86[AFR][1000 genomes] |
| rs13152659 | 0.90[AFR][1000 genomes] |
| rs17538277 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3806820 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4698791 | 0.96[AFR][1000 genomes] |
| rs4698793 | 0.96[AFR][1000 genomes] |
| rs56877163 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62324893 | 0.81[ASN][1000 genomes] |
| rs62324925 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62324938 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62324939 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6533456 | 0.86[AFR][1000 genomes] |
| rs6533458 | 0.86[AFR][1000 genomes] |
| rs6533459 | 0.86[AFR][1000 genomes] |
| rs6533466 | 0.98[AFR][1000 genomes] |
| rs6850937 | 0.98[AFR][1000 genomes] |
| rs7435548 | 0.86[AFR][1000 genomes] |
| rs7439880 | 0.86[AFR][1000 genomes] |
| rs7442505 | 0.91[AFR][1000 genomes] |
| rs7674237 | 0.86[AFR][1000 genomes] |
| rs7698552 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349784 | chr4:110348873-110723163 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv966307 | chr4:110708883-110721699 | Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:110709600-110714400 | Weak transcription | HepG2 | liver |
