Variant report

Variant	rs62335889
Chromosome Location	chr4:159104073-159104074
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:159103922..159105875-chr4:159131072..159133158,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM144-2	chr4:159103977-159104545	NONHSAT098988

Variant related genes	Relation type
ENSG00000164124	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10517688	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17037241	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4398571	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335861	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62335862	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1021067	chr4:158972282-159175475	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159095800-159113800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:159096400-159107400	Weak transcription	HSMMtube	muscle
3	chr4:159096400-159113600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:159096400-159131200	Weak transcription	Right Ventricle	heart
5	chr4:159096400-159131200	Weak transcription	HepG2	liver
6	chr4:159097800-159122400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr4:159098400-159110200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:159098400-159122800	Weak transcription	Fetal Intestine Small	intestine
9	chr4:159098800-159122800	Weak transcription	Fetal Intestine Large	intestine
10	chr4:159099600-159112800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:159099800-159107400	Weak transcription	Adipose Nuclei	Adipose
12	chr4:159099800-159114200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:159099800-159131200	Weak transcription	HSMM	muscle
14	chr4:159099800-159131400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:159100000-159108600	Weak transcription	Ovary	ovary
16	chr4:159100200-159120200	Weak transcription	Aorta	Aorta
17	chr4:159100600-159106200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr4:159101600-159130400	Weak transcription	HUVEC	blood vessel
19	chr4:159103000-159104200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr4:159103200-159104400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:159103200-159105000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr4:159103400-159104200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:159103600-159104200	Enhancers	Brain Hippocampus Middle	brain
24	chr4:159103600-159104200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr4:159103600-159104200	Enhancers	Brain Substantia Nigra	brain
26	chr4:159103600-159104400	Enhancers	Brain Cingulate Gyrus	brain
27	chr4:159103600-159104400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:159103600-159104600	Active TSS	K562	blood
29	chr4:159103600-159104800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:159103600-159113200	Weak transcription	HMEC	breast
31	chr4:159103600-159113800	Weak transcription	Left Ventricle	heart
32	chr4:159103800-159104200	Weak transcription	Brain Angular Gyrus	brain
33	chr4:159103800-159104400	Weak transcription	Brain Anterior Caudate	brain
34	chr4:159103800-159104600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr4:159104000-159104200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:159104000-159104200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:159104000-159104200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr4:159104000-159104200	Enhancers	Lung	lung

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