Variant report

Variant	rs17037241
Chromosome Location	chr4:159095896-159095897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50645802..50647418-chr4:159095561..159097188,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104064	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10517688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10857308	0.81[CEU][hapmap]
rs12504989	0.82[CHB][hapmap]
rs17037003	0.81[AMR][1000 genomes]
rs2245735	0.84[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs4398571	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62335861	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62335862	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62335889	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62337014	0.81[AMR][1000 genomes]
rs62337015	0.81[AMR][1000 genomes]
rs6536298	0.85[CHB][hapmap]
rs6833295	0.92[JPT][hapmap]
rs7384	0.84[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1021067	chr4:158972282-159175475	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159092600-159096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:159092600-159104000	Weak transcription	Lung	lung
3	chr4:159092800-159097400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:159093800-159100000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:159094000-159096400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr4:159094000-159097400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:159094000-159097400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:159094000-159097400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:159094200-159097200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:159094200-159097200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:159094200-159097200	Weak transcription	Psoas Muscle	Psoas
12	chr4:159094200-159097200	Weak transcription	NH-A	brain
13	chr4:159094200-159097200	Weak transcription	NHEK	skin
14	chr4:159094200-159097400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:159094200-159097400	Weak transcription	Pancreas	Pancrea
16	chr4:159094200-159097400	Weak transcription	Small Intestine	intestine
17	chr4:159094200-159099200	Weak transcription	Placenta	Placenta
18	chr4:159094400-159096000	Enhancers	Colon Smooth Muscle	Colon
19	chr4:159094400-159096200	Enhancers	Brain Hippocampus Middle	brain
20	chr4:159094400-159096600	Enhancers	Fetal Intestine Small	intestine
21	chr4:159094400-159097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:159094400-159097200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:159094400-159097200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:159094400-159097200	Weak transcription	HSMM	muscle
25	chr4:159094400-159097400	Weak transcription	Gastric	stomach
26	chr4:159094400-159098400	Enhancers	HMEC	breast
27	chr4:159094400-159103200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr4:159094600-159096400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:159094600-159096600	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr4:159094600-159097600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr4:159094600-159098800	Enhancers	Adipose Nuclei	Adipose
32	chr4:159094600-159098800	Enhancers	Fetal Intestine Large	intestine
33	chr4:159094800-159097400	Weak transcription	Stomach Mucosa	stomach
34	chr4:159094800-159097400	Weak transcription	Osteobl	bone
35	chr4:159094800-159100000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:159095000-159096400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr4:159095000-159097200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:159095000-159100400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr4:159095000-159103200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:159095200-159096000	Enhancers	Spleen	Spleen
41	chr4:159095200-159096400	Enhancers	HepG2	liver
42	chr4:159095200-159096600	Enhancers	Fetal Heart	heart
43	chr4:159095200-159097200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr4:159095200-159097400	Weak transcription	Aorta	Aorta
45	chr4:159095200-159097400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr4:159095200-159097600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr4:159095400-159096000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr4:159095400-159096400	Enhancers	Left Ventricle	heart
49	chr4:159095400-159096400	Enhancers	Ovary	ovary
50	chr4:159095400-159096800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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