Variant report

Variant	rs62337015
Chromosome Location	chr4:159052482-159052483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:159050953..159052978-chr4:159078591..159080720,2	MCF-7	breast:
2	chr4:159050564..159053243-chr4:159059556..159061367,2	MCF-7	breast:
3	chr4:159050755..159053105-chr4:159053356..159055470,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12506818	0.82[EUR][1000 genomes]
rs12506953	0.82[EUR][1000 genomes]
rs17037003	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17037241	0.81[AMR][1000 genomes]
rs2245735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4398571	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62335861	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62335862	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62337014	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7384	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1021067	chr4:158972282-159175475	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159042600-159053400	Weak transcription	Right Atrium	heart
2	chr4:159042600-159053600	Weak transcription	Brain Anterior Caudate	brain
3	chr4:159042600-159060200	Weak transcription	Brain Substantia Nigra	brain
4	chr4:159042800-159053400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:159042800-159053800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:159042800-159054800	Weak transcription	Fetal Heart	heart
7	chr4:159042800-159083600	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:159044800-159071000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:159044800-159073200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:159045200-159058600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr4:159045200-159059400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr4:159046200-159054200	Strong transcription	HUVEC	blood vessel
13	chr4:159046400-159053400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:159046800-159053200	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:159047000-159080200	Weak transcription	Right Ventricle	heart
16	chr4:159047200-159058600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:159049200-159070000	Weak transcription	Placenta	Placenta
18	chr4:159049400-159053800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:159050800-159052600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr4:159050800-159052800	Enhancers	HMEC	breast
21	chr4:159050800-159052800	Enhancers	NHEK	skin
22	chr4:159051000-159053000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:159051000-159061000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr4:159051200-159052600	Strong transcription	Left Ventricle	heart
25	chr4:159051400-159052600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:159051600-159056000	Weak transcription	Brain Hippocampus Middle	brain
27	chr4:159051800-159052600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:159051800-159052600	Enhancers	Aorta	Aorta
29	chr4:159051800-159052600	Enhancers	NHLF	lung
30	chr4:159051800-159053600	Enhancers	Rectal Smooth Muscle	rectum
31	chr4:159051800-159070600	Weak transcription	Fetal Intestine Large	intestine
32	chr4:159051800-159073000	Weak transcription	Fetal Stomach	stomach
33	chr4:159051800-159080400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:159052000-159052600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:159052000-159052600	Enhancers	Fetal Intestine Small	intestine
36	chr4:159052000-159054600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr4:159052000-159071400	Weak transcription	Adipose Nuclei	Adipose
38	chr4:159052200-159052600	Genic enhancers	Ovary	ovary
39	chr4:159052200-159052600	Genic enhancers	HSMM	muscle
40	chr4:159052200-159052600	Genic enhancers	HSMMtube	muscle
41	chr4:159052200-159052800	Enhancers	HepG2	liver
42	chr4:159052200-159054000	Enhancers	NHDF-Ad	bronchial
43	chr4:159052200-159054200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:159052200-159055200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:159052200-159071400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:159052200-159072800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr4:159052400-159052600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:159052400-159053800	Enhancers	Small Intestine	intestine
49	chr4:159052400-159060200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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