Variant report

Variant	rs62336960
Chromosome Location	chr4:158965484-158965485
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10517684	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10857307	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10857308	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11100145	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11100147	0.82[EUR][1000 genomes]
rs12498860	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12501025	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12504989	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12505752	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12505934	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12510436	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12511544	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12511578	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12511957	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12512064	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12643255	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12644342	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12645318	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12648000	0.82[EUR][1000 genomes]
rs12650454	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13130663	0.82[EUR][1000 genomes]
rs13144391	0.82[EUR][1000 genomes]
rs17036918	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17036921	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1839129	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1839130	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2594763	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2594769	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35146306	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35354204	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3934848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129400	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4132016	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4132443	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4307005	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4460050	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4464607	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4629502	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4637451	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4691449	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4691451	0.82[EUR][1000 genomes]
rs57156989	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58762368	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62335304	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335305	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335306	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335307	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335308	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335310	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335311	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335313	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335314	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62335315	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62335316	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62335317	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62335339	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62335341	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62335345	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62335346	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62335358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62335359	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62336961	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62336984	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6815131	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6827475	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6838282	0.82[EUR][1000 genomes]
rs72965897	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72967808	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72967836	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs964237	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs982239	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158959200-158965600	Weak transcription	Pancreas	Pancrea
2	chr4:158964600-158967200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:158964600-158967400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:158964800-158967200	Weak transcription	Osteobl	bone
5	chr4:158964800-158967600	Weak transcription	HSMMtube	muscle
6	chr4:158964800-158971800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:158965000-158967200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:158965000-158971800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:158965000-158971800	Weak transcription	NHDF-Ad	bronchial
10	chr4:158965400-158965800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links