Variant report

Variant	rs62336984
Chromosome Location	chr4:158984525-158984526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:158983032..158986002-chr4:158989466..158992297,3	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10517684	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10857307	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10857308	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11100145	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11100147	0.82[EUR][1000 genomes]
rs12498860	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12501025	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12504989	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12505752	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505934	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12506818	0.81[ASN][1000 genomes]
rs12510436	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12511544	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12511578	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12511957	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12512064	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12643255	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12644342	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12645318	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12648000	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12650454	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13130663	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13144391	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17036918	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036921	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1839129	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1839130	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2594763	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2594769	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35146306	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35354204	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3934848	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4129400	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4132016	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4132443	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4307005	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4460050	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4464607	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4629502	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4637451	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4691449	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4691451	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57156989	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58762368	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335304	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62335305	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62335306	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62335307	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62335308	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62335310	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62335311	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62335313	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62335314	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62335315	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335316	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335317	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335339	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62335341	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62335345	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62335346	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62335358	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62335359	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62336960	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62336961	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6815131	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6827475	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6838282	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72965897	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72967808	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72967836	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs964237	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs982239	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1021067	chr4:158972282-159175475	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158978400-158985200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:158981400-158985800	Weak transcription	HUVEC	blood vessel

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