Variant report
| Variant | rs62338537 |
|---|---|
| Chromosome Location | chr4:160681931-160681932 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1502746 | 0.94[ASN][1000 genomes] |
| rs1502747 | 0.94[ASN][1000 genomes] |
| rs17038749 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17038762 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17038893 | 1.00[AMR][1000 genomes] |
| rs62332987 | 1.00[AMR][1000 genomes] |
| rs62332988 | 1.00[AMR][1000 genomes] |
| rs62332990 | 1.00[AMR][1000 genomes] |
| rs62332991 | 1.00[AMR][1000 genomes] |
| rs62332992 | 1.00[AMR][1000 genomes] |
| rs62333019 | 1.00[AMR][1000 genomes] |
| rs62333022 | 1.00[AMR][1000 genomes] |
| rs62333028 | 1.00[AMR][1000 genomes] |
| rs62333029 | 1.00[AMR][1000 genomes] |
| rs62335365 | 0.83[AMR][1000 genomes] |
| rs62335366 | 0.83[AMR][1000 genomes] |
| rs62338532 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs62338533 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs62338534 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs62339769 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7669796 | 0.90[ASN][1000 genomes] |
| rs7684510 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015469 | chr4:160389277-160841619 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv537316 | chr4:160389277-160841619 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv4574 | chr4:160652259-160686024 | Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:160666600-160685400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
