Variant report

Variant	rs7669796
Chromosome Location	chr4:160644401-160644402
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11100248	0.81[ASN][1000 genomes]
rs11100250	0.81[ASN][1000 genomes]
rs1502727	0.81[ASN][1000 genomes]
rs1502729	0.81[ASN][1000 genomes]
rs1502746	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1502747	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17038749	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17038762	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2047794	0.81[ASN][1000 genomes]
rs2134425	0.81[ASN][1000 genomes]
rs62338532	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62338533	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62338534	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62338537	0.90[ASN][1000 genomes]
rs62339769	0.89[ASN][1000 genomes]
rs6536455	0.81[ASN][1000 genomes]
rs7684510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699838	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595813	chr4:160574450-160665365	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160644200-160644800	Enhancers	Gastric	stomach
2	chr4:160644200-160644800	Enhancers	Pancreas	Pancrea
3	chr4:160644400-160644600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:160644400-160644600	Enhancers	Right Ventricle	heart
5	chr4:160644400-160645000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links