Variant report

Variant	rs62346268
Chromosome Location	chr4:151612463-151612464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10008077	1.00[ASN][1000 genomes]
rs1148642	1.00[ASN][1000 genomes]
rs1201202	1.00[ASN][1000 genomes]
rs12645871	0.91[AFR][1000 genomes]
rs13126388	0.89[AFR][1000 genomes]
rs17027030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17027034	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17027100	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17027158	1.00[ASN][1000 genomes]
rs17440394	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947314	0.97[AFR][1000 genomes]
rs2122920	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35879351	1.00[ASN][1000 genomes]
rs4696629	0.80[AFR][1000 genomes]
rs57218449	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57518605	1.00[ASN][1000 genomes]
rs58328072	1.00[ASN][1000 genomes]
rs59572961	1.00[ASN][1000 genomes]
rs60102523	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60391819	1.00[ASN][1000 genomes]
rs61258128	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61371689	1.00[ASN][1000 genomes]
rs61668839	1.00[ASN][1000 genomes]
rs62344564	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62344565	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62344567	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62344568	0.87[EUR][1000 genomes]
rs62344569	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62344571	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62344572	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62344573	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62344578	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62344579	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62344582	1.00[ASN][1000 genomes]
rs62344596	1.00[ASN][1000 genomes]
rs62344597	1.00[ASN][1000 genomes]
rs62344598	1.00[ASN][1000 genomes]
rs62344605	1.00[ASN][1000 genomes]
rs62346260	1.00[ASN][1000 genomes]
rs62346265	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346295	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346297	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346301	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346303	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346304	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346305	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346306	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346307	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346308	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346309	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346311	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346337	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346338	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346341	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346345	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62346346	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346348	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346349	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346350	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346351	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535743	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6535744	1.00[ASN][1000 genomes]
rs6819868	1.00[ASN][1000 genomes]
rs6841158	0.90[AFR][1000 genomes]
rs6854740	0.93[AFR][1000 genomes]
rs716474	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73859222	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73859291	1.00[ASN][1000 genomes]
rs73859295	1.00[ASN][1000 genomes]
rs7665652	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677186	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698142	0.94[AFR][1000 genomes]
rs971640	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1032070	chr4:151514664-151775259	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830113	chr4:151538184-151691942	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1029861	chr4:151556384-151720601	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151487200-151655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:151577600-151637000	Weak transcription	Primary T cells from cord blood	blood
3	chr4:151582200-151642800	Weak transcription	Left Ventricle	heart
4	chr4:151595000-151654800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:151601600-151644400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr4:151602000-151615800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:151602000-151617000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:151602200-151643800	Weak transcription	Fetal Intestine Small	intestine
9	chr4:151602400-151621800	Weak transcription	Fetal Intestine Large	intestine
10	chr4:151604800-151644600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:151605000-151622800	Weak transcription	Primary B cells from cord blood	blood
12	chr4:151605200-151616400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:151605400-151619400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr4:151605400-151629000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:151605600-151644200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:151606000-151615200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:151606000-151643800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:151606200-151612600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:151606200-151615000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:151606200-151616600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:151606400-151615600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:151609000-151615600	Weak transcription	Liver	Liver
23	chr4:151611000-151620200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:151611800-151619600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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