Variant report

Variant	rs6535743
Chromosome Location	chr4:151590887-151590888
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10155442	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11099774	0.86[AFR][1000 genomes]
rs1201202	1.00[ASN][1000 genomes]
rs12499862	0.87[AMR][1000 genomes]
rs12508892	0.87[AMR][1000 genomes]
rs17027030	1.00[ASN][1000 genomes]
rs17027034	1.00[ASN][1000 genomes]
rs17027100	1.00[ASN][1000 genomes]
rs17027158	1.00[ASN][1000 genomes]
rs17440394	1.00[ASN][1000 genomes]
rs2122920	1.00[ASN][1000 genomes]
rs28451271	0.80[AMR][1000 genomes]
rs35879351	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4235250	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4269161	0.80[AMR][1000 genomes]
rs4289432	0.84[AMR][1000 genomes]
rs4311291	0.80[AMR][1000 genomes]
rs4328896	0.90[AMR][1000 genomes]
rs4396972	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4417951	0.90[AMR][1000 genomes]
rs4476581	0.90[AMR][1000 genomes]
rs4604037	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4619872	0.80[AMR][1000 genomes]
rs4696629	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs57218449	1.00[ASN][1000 genomes]
rs59572961	1.00[ASN][1000 genomes]
rs60102523	1.00[ASN][1000 genomes]
rs60391819	1.00[ASN][1000 genomes]
rs61258128	1.00[ASN][1000 genomes]
rs61371689	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61668839	1.00[ASN][1000 genomes]
rs62344564	1.00[ASN][1000 genomes]
rs62344565	1.00[ASN][1000 genomes]
rs62344567	1.00[ASN][1000 genomes]
rs62344569	1.00[ASN][1000 genomes]
rs62344571	1.00[ASN][1000 genomes]
rs62344572	1.00[ASN][1000 genomes]
rs62344573	1.00[ASN][1000 genomes]
rs62344578	1.00[ASN][1000 genomes]
rs62344579	1.00[ASN][1000 genomes]
rs62344582	1.00[ASN][1000 genomes]
rs62344596	1.00[ASN][1000 genomes]
rs62344597	1.00[ASN][1000 genomes]
rs62344598	1.00[ASN][1000 genomes]
rs62344739	0.92[EUR][1000 genomes]
rs62346260	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346265	1.00[ASN][1000 genomes]
rs62346268	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62346294	1.00[ASN][1000 genomes]
rs62346295	1.00[ASN][1000 genomes]
rs62346297	1.00[ASN][1000 genomes]
rs62346301	1.00[ASN][1000 genomes]
rs62346303	1.00[ASN][1000 genomes]
rs62346304	1.00[ASN][1000 genomes]
rs62346305	1.00[ASN][1000 genomes]
rs62346306	1.00[ASN][1000 genomes]
rs62346307	1.00[ASN][1000 genomes]
rs62346308	1.00[ASN][1000 genomes]
rs62346309	1.00[ASN][1000 genomes]
rs62346311	1.00[ASN][1000 genomes]
rs62346337	1.00[ASN][1000 genomes]
rs62346338	1.00[ASN][1000 genomes]
rs62346341	1.00[ASN][1000 genomes]
rs62346346	1.00[ASN][1000 genomes]
rs62346348	1.00[ASN][1000 genomes]
rs62346349	1.00[ASN][1000 genomes]
rs62346350	1.00[ASN][1000 genomes]
rs62346351	1.00[ASN][1000 genomes]
rs62348577	1.00[ASN][1000 genomes]
rs6535744	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68016242	0.82[AMR][1000 genomes]
rs6832498	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6846154	0.80[AMR][1000 genomes]
rs6852493	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs716474	1.00[ASN][1000 genomes]
rs73859222	1.00[ASN][1000 genomes]
rs73859291	1.00[ASN][1000 genomes]
rs7665652	1.00[ASN][1000 genomes]
rs7677186	1.00[ASN][1000 genomes]
rs971640	1.00[ASN][1000 genomes]
rs9790393	0.80[AMR][1000 genomes]
rs9995388	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1032070	chr4:151514664-151775259	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830113	chr4:151538184-151691942	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1029861	chr4:151556384-151720601	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151487200-151655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:151533400-151596200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:151571200-151601600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:151571200-151604600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr4:151574800-151601200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:151577600-151637000	Weak transcription	Primary T cells from cord blood	blood
7	chr4:151579400-151604400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:151582200-151642800	Weak transcription	Left Ventricle	heart
9	chr4:151582600-151595800	Weak transcription	Fetal Intestine Small	intestine
10	chr4:151583400-151603400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:151586000-151600800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr4:151586400-151604800	Weak transcription	HSMM	muscle
13	chr4:151587000-151600200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:151587000-151600600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:151587000-151603400	Weak transcription	Aorta	Aorta
16	chr4:151587000-151604600	Weak transcription	Small Intestine	intestine
17	chr4:151587400-151592400	Weak transcription	Primary B cells from cord blood	blood
18	chr4:151587400-151605000	Weak transcription	GM12878-XiMat	blood
19	chr4:151589600-151591200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:151590200-151601000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:151590800-151603200	Weak transcription	Primary T cells fromperipheralblood	blood

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