Variant report

Variant	rs62356725
Chromosome Location	chr5:58426739-58426740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10059053	0.96[ASN][1000 genomes]
rs10461658	0.81[ASN][1000 genomes]
rs62356727	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62356729	0.89[ASN][1000 genomes]
rs62356730	0.89[ASN][1000 genomes]
rs62356731	0.89[ASN][1000 genomes]
rs62357962	0.81[ASN][1000 genomes]
rs62357965	0.81[ASN][1000 genomes]
rs62357966	0.81[ASN][1000 genomes]
rs62357967	0.81[ASN][1000 genomes]
rs62357968	0.81[ASN][1000 genomes]
rs62357969	0.81[ASN][1000 genomes]
rs62357971	0.81[ASN][1000 genomes]
rs62357972	0.81[ASN][1000 genomes]
rs62357973	0.81[ASN][1000 genomes]
rs6863716	0.81[ASN][1000 genomes]
rs6877256	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58423800-58429400	Weak transcription	Aorta	Aorta
2	chr5:58424000-58427200	Enhancers	Hela-S3	cervix
3	chr5:58424000-58439800	Weak transcription	Small Intestine	intestine
4	chr5:58424000-58447000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:58424200-58427200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:58424200-58427400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:58424200-58429400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:58424200-58429400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:58424200-58429400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:58424200-58429400	Weak transcription	Left Ventricle	heart
11	chr5:58424200-58429400	Weak transcription	Psoas Muscle	Psoas
12	chr5:58424200-58429400	Weak transcription	HMEC	breast
13	chr5:58424200-58432800	Weak transcription	Right Ventricle	heart
14	chr5:58424200-58446200	Weak transcription	Fetal Intestine Large	intestine
15	chr5:58424200-58446600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr5:58424400-58427200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:58424400-58427600	Enhancers	Fetal Heart	heart
18	chr5:58424400-58430200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:58424400-58431400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:58424600-58426800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr5:58424600-58427400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr5:58424600-58429400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:58424600-58429600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:58424800-58427400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr5:58424800-58428000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:58424800-58428400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr5:58424800-58428600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr5:58424800-58429000	Weak transcription	NHDF-Ad	bronchial
29	chr5:58424800-58429400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:58424800-58429400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr5:58424800-58429400	Weak transcription	Right Atrium	heart
32	chr5:58424800-58429600	Weak transcription	HSMM	muscle
33	chr5:58425000-58426800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr5:58425000-58427600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:58425000-58429600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:58425000-58429600	Weak transcription	Osteobl	bone
37	chr5:58425200-58426800	Weak transcription	Primary T cells from cord blood	blood
38	chr5:58425200-58427400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr5:58425200-58429400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr5:58425200-58429400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:58425400-58429400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr5:58425600-58429400	Weak transcription	Colon Smooth Muscle	Colon
43	chr5:58425600-58429400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr5:58425800-58426800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:58425800-58427200	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr5:58425800-58429800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr5:58426000-58426800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr5:58426000-58427200	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr5:58426000-58427400	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr5:58426000-58427800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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