The 2.0 version of rSNPBase

Variant report

Variant rs62356730
Chromosome Location chr5:58448482-58448483
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58427200-58454000 Weak transcription Primary neutrophils fromperipheralblood blood
2 chr5:58433000-58451600 Weak transcription Fetal Muscle Leg muscle
3 chr5:58437400-58454000 Weak transcription Rectal Smooth Muscle rectum
4 chr5:58439000-58484000 Weak transcription Fetal Kidney kidney
5 chr5:58440200-58448600 Weak transcription Brain Anterior Caudate brain
6 chr5:58442400-58448600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr5:58444000-58449800 Genic enhancers A549 lung
8 chr5:58446000-58448600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr5:58446200-58449000 Enhancers Fetal Intestine Large intestine
10 chr5:58446800-58449200 Enhancers Pancreatic Islets Pancreatic Islet
11 chr5:58447000-58449400 Enhancers Primary T helper cells PMA-I stimulated --
12 chr5:58447000-58450000 Enhancers Primary T helper 17 cells PMA-I stimulated --
13 chr5:58447000-58453400 Enhancers Primary T cells from cord blood blood
14 chr5:58447200-58450000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
15 chr5:58447400-58449200 Enhancers Colon Smooth Muscle Colon
16 chr5:58447400-58449800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
17 chr5:58447400-58451200 Weak transcription Hela-S3 cervix
18 chr5:58447600-58448600 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr5:58447600-58448600 Weak transcription Psoas Muscle Psoas
20 chr5:58447600-58448800 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr5:58447600-58448800 Weak transcription Small Intestine intestine
22 chr5:58447600-58449600 Enhancers Primary T helper cells fromperipheralblood blood
23 chr5:58447600-58454800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr5:58447600-58464000 Weak transcription Right Ventricle heart
25 chr5:58447600-58465200 Weak transcription Right Atrium heart
26 chr5:58447600-58473200 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr5:58447600-58473400 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr5:58447600-58479600 Weak transcription Left Ventricle heart
29 chr5:58447800-58448600 Weak transcription HepG2 liver
30 chr5:58447800-58449000 Enhancers Thymus Thymus
31 chr5:58447800-58453000 Weak transcription Fetal Heart heart
32 chr5:58448000-58448600 Weak transcription Fetal Intestine Small intestine
33 chr5:58448000-58449000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr5:58448200-58449000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr5:58448400-58448600 Enhancers Primary hematopoietic stem cells blood
36 chr5:58448400-58448600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
37 chr5:58448400-58449000 Enhancers Breast Myoepithelial Primary Cells Breast
38 chr5:58448400-58449200 Enhancers Primary T helper naive cells from peripheral blood blood
39 chr5:58448400-58449200 Enhancers Primary T killer memory cells from peripheral blood blood
40 chr5:58448400-58449200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr5:58448400-58449200 Enhancers GM12878-XiMat blood
42 chr5:58448400-58449400 Enhancers Primary hematopoietic stem cells short term culture blood
43 chr5:58448400-58449400 Enhancers Primary T killer naive cells fromperipheralblood blood
44 chr5:58448400-58449800 Enhancers Skeletal Muscle Female skeletal muscle
45 chr5:58448400-58450000 Enhancers Fetal Thymus thymus

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Last update: Aug 31, 2015