Variant report

Variant	rs62357963
Chromosome Location	chr5:58457656-58457657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10461658	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62356727	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62356729	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62356730	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62356731	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62357962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62357965	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62357966	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62357967	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62357968	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62357969	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62357971	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62357972	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62357973	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6863716	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6877256	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv881702	chr5:58432413-58474854	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58439000-58484000	Weak transcription	Fetal Kidney	kidney
2	chr5:58447600-58464000	Weak transcription	Right Ventricle	heart
3	chr5:58447600-58465200	Weak transcription	Right Atrium	heart
4	chr5:58447600-58473200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:58447600-58473400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:58447600-58479600	Weak transcription	Left Ventricle	heart
7	chr5:58449400-58473600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:58449800-58489400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:58450000-58460200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:58451400-58459600	Weak transcription	Fetal Lung	lung
11	chr5:58452200-58464000	Weak transcription	Hela-S3	cervix
12	chr5:58452800-58458200	Genic enhancers	A549	lung
13	chr5:58454000-58459400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:58454200-58465000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:58454400-58472800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:58454800-58459800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:58454800-58459800	Weak transcription	HSMM	muscle
18	chr5:58455200-58473400	Weak transcription	Fetal Muscle Leg	muscle
19	chr5:58455800-58473600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr5:58456000-58459600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:58456000-58460600	Weak transcription	Colon Smooth Muscle	Colon
22	chr5:58456400-58458200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:58456400-58458400	Enhancers	Fetal Intestine Large	intestine
24	chr5:58456600-58464000	Weak transcription	Psoas Muscle	Psoas
25	chr5:58456800-58459000	Enhancers	Fetal Thymus	thymus
26	chr5:58457000-58457800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr5:58457000-58457800	Enhancers	Fetal Intestine Small	intestine
28	chr5:58457000-58458000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:58457000-58458000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr5:58457000-58458200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr5:58457000-58458200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr5:58457000-58458400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr5:58457000-58458600	Enhancers	Primary T cells from cord blood	blood
34	chr5:58457200-58457800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr5:58457200-58458000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr5:58457200-58458200	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr5:58457200-58458400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr5:58457200-58458600	Enhancers	Thymus	Thymus
39	chr5:58457600-58458000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr5:58457600-58458000	Enhancers	HepG2	liver
41	chr5:58457600-58458200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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