Variant report

Variant	rs62356878
Chromosome Location	chr5:36439869-36439870
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36435521..36437217-chr5:36439204..36440753,2	K562	blood:
2	chr5:36430520..36432569-chr5:36437537..36440478,3	K562	blood:
3	chr5:36438693..36440826-chr5:36441335..36444284,3	K562	blood:
4	chr5:36438756..36441045-chr5:36448106..36450259,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10941294	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2455269	0.89[EUR][1000 genomes]
rs2455270	0.84[EUR][1000 genomes]
rs2455271	0.82[EUR][1000 genomes]
rs2455272	0.83[EUR][1000 genomes]
rs2455275	0.81[EUR][1000 genomes]
rs2455276	0.81[EUR][1000 genomes]
rs2455280	0.81[EUR][1000 genomes]
rs2468507	0.88[EUR][1000 genomes]
rs2468508	0.84[EUR][1000 genomes]
rs2468510	0.84[EUR][1000 genomes]
rs2468513	0.83[EUR][1000 genomes]
rs2468515	0.81[EUR][1000 genomes]
rs2468517	0.84[EUR][1000 genomes]
rs2468518	0.84[EUR][1000 genomes]
rs2937558	0.84[EUR][1000 genomes]
rs2956572	0.81[EUR][1000 genomes]
rs62354544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62356876	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62356877	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62356879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72730760	0.82[EUR][1000 genomes]
rs7732757	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517278	chr5:36430755-36445802	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv597816	chr5:36431978-36443160	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv597817	chr5:36433782-36460075	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36435800-36440800	Enhancers	Brain Anterior Caudate	brain
2	chr5:36436000-36441000	Weak transcription	Placenta	Placenta
3	chr5:36436600-36440000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:36438600-36440400	Enhancers	K562	blood
5	chr5:36438600-36443000	Enhancers	Brain Hippocampus Middle	brain
6	chr5:36438800-36442600	Enhancers	Brain Germinal Matrix	brain
7	chr5:36438800-36442600	Enhancers	Hela-S3	cervix
8	chr5:36439000-36440000	Enhancers	Brain Angular Gyrus	brain
9	chr5:36439000-36442400	Enhancers	Brain Substantia Nigra	brain
10	chr5:36439200-36440000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:36439200-36440000	Enhancers	Fetal Muscle Trunk	muscle
12	chr5:36439200-36440200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:36439200-36440400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr5:36439200-36446600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:36439400-36440200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:36439400-36441800	Weak transcription	Esophagus	oesophagus
17	chr5:36439800-36440000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:36439800-36440000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr5:36439800-36440000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:36439800-36440200	Enhancers	Fetal Thymus	thymus
21	chr5:36439800-36441200	Enhancers	Fetal Brain Male	brain
22	chr5:36439800-36446400	Enhancers	Cortex derived primary cultured neurospheres	brain

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