Variant report

Variant	rs62356883
Chromosome Location	chr5:36459760-36459761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10058431	0.83[ASN][1000 genomes]
rs11955618	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12516155	0.83[ASN][1000 genomes]
rs17286376	0.83[ASN][1000 genomes]
rs17358533	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34775837	0.86[ASN][1000 genomes]
rs4242269	0.82[ASN][1000 genomes]
rs4869481	0.82[ASN][1000 genomes]
rs66990413	0.83[ASN][1000 genomes]
rs6883721	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7709504	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597817	chr5:36433782-36460075	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv597818	chr5:36440940-36460462	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv597819	chr5:36445458-36472990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1023545	chr5:36448895-36461331	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1016667	chr5:36448895-36464362	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2763449	chr5:36448895-36464374	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv597820	chr5:36452065-36463088	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv517187	chr5:36452471-36460462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv462121	chr5:36456056-36460425	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv597821	chr5:36456056-36460425	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36445800-36462800	Weak transcription	Esophagus	oesophagus
2	chr5:36456800-36460600	Enhancers	HMEC	breast
3	chr5:36457400-36459800	Enhancers	Hela-S3	cervix
4	chr5:36457400-36460400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr5:36457400-36460400	Enhancers	NHEK	skin
6	chr5:36457400-36461000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:36457600-36460400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:36457800-36462200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:36457800-36468000	Weak transcription	Fetal Heart	heart
10	chr5:36458200-36462600	Weak transcription	NH-A	brain
11	chr5:36458200-36462800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:36458400-36460000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:36458400-36462200	Weak transcription	Osteobl	bone
14	chr5:36458400-36462400	Weak transcription	HSMMtube	muscle
15	chr5:36459000-36459800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:36459000-36460400	Enhancers	Placenta	Placenta
17	chr5:36459000-36460800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:36459200-36462200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr5:36459400-36462200	Weak transcription	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links