Variant report

Variant	rs6883721
Chromosome Location	chr5:36458276-36458277
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36457469..36459383-chr5:36460695..36462337,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10058431	0.86[ASN][1000 genomes]
rs11955618	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12516155	0.86[ASN][1000 genomes]
rs17286376	0.86[ASN][1000 genomes]
rs17358533	0.95[ASN][1000 genomes]
rs34775837	0.89[ASN][1000 genomes]
rs4242269	0.85[ASN][1000 genomes]
rs4485952	0.82[ASN][1000 genomes]
rs4869481	0.85[ASN][1000 genomes]
rs62356883	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs66990413	0.86[ASN][1000 genomes]
rs7709504	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597817	chr5:36433782-36460075	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv597818	chr5:36440940-36460462	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv597819	chr5:36445458-36472990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1023545	chr5:36448895-36461331	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1016667	chr5:36448895-36464362	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2763449	chr5:36448895-36464374	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv597820	chr5:36452065-36463088	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv517187	chr5:36452471-36460462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv462121	chr5:36456056-36460425	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv597821	chr5:36456056-36460425	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36445800-36462800	Weak transcription	Esophagus	oesophagus
2	chr5:36453400-36459000	Weak transcription	Placenta	Placenta
3	chr5:36456800-36459400	Enhancers	HSMM	muscle
4	chr5:36456800-36460600	Enhancers	HMEC	breast
5	chr5:36457400-36458400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:36457400-36458400	Enhancers	Osteobl	bone
7	chr5:36457400-36459000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:36457400-36459400	Enhancers	Fetal Intestine Large	intestine
9	chr5:36457400-36459800	Enhancers	Hela-S3	cervix
10	chr5:36457400-36460400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:36457400-36460400	Enhancers	NHEK	skin
12	chr5:36457400-36461000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:36457600-36458400	Enhancers	HSMMtube	muscle
14	chr5:36457600-36458600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:36457600-36460400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:36457800-36462200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:36457800-36468000	Weak transcription	Fetal Heart	heart
18	chr5:36458000-36459000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:36458200-36459200	Weak transcription	Fetal Intestine Small	intestine
20	chr5:36458200-36462600	Weak transcription	NH-A	brain
21	chr5:36458200-36462800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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