Variant report

Variant	rs62359632
Chromosome Location	chr5:107222069-107222070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57585211	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7708343	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107195400-107223200	Weak transcription	Left Ventricle	heart
2	chr5:107196800-107223200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:107197800-107228800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:107198000-107223000	Weak transcription	Adipose Nuclei	Adipose
5	chr5:107205800-107230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:107209400-107226000	Weak transcription	Psoas Muscle	Psoas
7	chr5:107212000-107228800	Weak transcription	Aorta	Aorta
8	chr5:107212400-107223200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:107213000-107223200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:107213200-107225000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:107213600-107223400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:107216000-107223000	Weak transcription	Ovary	ovary
13	chr5:107216200-107223000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:107216400-107240600	Weak transcription	Primary B cells from cord blood	blood
15	chr5:107216600-107226200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:107220000-107223000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:107220400-107223000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:107220600-107222200	Weak transcription	Fetal Intestine Large	intestine
19	chr5:107220600-107222600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr5:107220600-107223200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr5:107221000-107222800	Enhancers	Primary T cells from cord blood	blood
22	chr5:107221400-107223600	Enhancers	Thymus	Thymus
23	chr5:107221800-107222200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:107221800-107222200	Enhancers	Stomach Mucosa	stomach
25	chr5:107221800-107223600	Enhancers	HUVEC	blood vessel
26	chr5:107221800-107229000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:107222000-107222200	Enhancers	Esophagus	oesophagus
28	chr5:107222000-107222200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr5:107222000-107222600	Enhancers	Fetal Thymus	thymus
30	chr5:107222000-107223000	Enhancers	GM12878-XiMat	blood
31	chr5:107222000-107223200	Enhancers	Fetal Intestine Small	intestine

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