Variant report

Variant	rs62361872
Chromosome Location	chr3:170540334-170540335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11960207	0.88[ASN][1000 genomes]
rs12520119	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12522020	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12653636	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1289165	0.85[ASN][1000 genomes]
rs1289166	0.87[ASN][1000 genomes]
rs1289169	0.81[ASN][1000 genomes]
rs1289171	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1289172	0.83[ASN][1000 genomes]
rs1289181	0.87[ASN][1000 genomes]
rs1289185	0.98[ASN][1000 genomes]
rs1289188	0.92[ASN][1000 genomes]
rs1289210	0.92[ASN][1000 genomes]
rs1289212	0.92[ASN][1000 genomes]
rs1289214	0.92[ASN][1000 genomes]
rs1289218	0.87[ASN][1000 genomes]
rs1289219	0.87[ASN][1000 genomes]
rs1289223	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1289224	0.83[ASN][1000 genomes]
rs1289228	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1289230	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1296452	0.96[ASN][1000 genomes]
rs1296454	0.85[ASN][1000 genomes]
rs13190616	0.88[ASN][1000 genomes]
rs1362697	0.81[ASN][1000 genomes]
rs1420863	0.80[ASN][1000 genomes]
rs1420864	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1420865	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1592634	0.84[ASN][1000 genomes]
rs1922494	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2111430	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2111431	0.87[ASN][1000 genomes]
rs2111432	0.88[ASN][1000 genomes]
rs2403366	0.84[ASN][1000 genomes]
rs2707382	0.84[ASN][1000 genomes]
rs4496683	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4703024	0.88[ASN][1000 genomes]
rs4703281	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4703282	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62363598	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6596559	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6596560	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6887182	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7732790	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012255	chr3:170386770-170595790	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:170530400-170541000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:170531400-170543400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:170534000-170543600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:170535400-170541800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:170535600-170541400	Weak transcription	K562	blood
6	chr3:170536200-170543400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:170538000-170540800	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr3:170540200-170543000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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