Variant report

Variant	rs1289224
Chromosome Location	chr5:103396375-103396376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12654426	0.80[ASN][1000 genomes]
rs1289165	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1289166	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1289181	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1289184	0.81[ASN][1000 genomes]
rs1289185	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1289188	0.81[ASN][1000 genomes]
rs1289210	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1289212	0.81[ASN][1000 genomes]
rs1289214	0.81[ASN][1000 genomes]
rs1289218	0.89[AMR][1000 genomes]
rs1289219	0.91[AMR][1000 genomes]
rs1289223	0.99[ASN][1000 genomes]
rs1289228	0.95[ASN][1000 genomes]
rs1289230	0.94[ASN][1000 genomes]
rs1296452	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1296454	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1420862	0.80[ASN][1000 genomes]
rs1420863	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1592634	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1922494	0.94[ASN][1000 genomes]
rs1990745	0.81[ASN][1000 genomes]
rs2111430	0.94[ASN][1000 genomes]
rs2111431	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2403366	0.96[ASN][1000 genomes]
rs2707382	0.82[AMR][1000 genomes]
rs4496683	0.91[ASN][1000 genomes]
rs4703280	0.81[ASN][1000 genomes]
rs4703281	0.96[ASN][1000 genomes]
rs4703282	0.83[ASN][1000 genomes]
rs55779157	0.80[ASN][1000 genomes]
rs62361872	0.83[ASN][1000 genomes]
rs62363598	0.93[ASN][1000 genomes]
rs6596559	0.89[ASN][1000 genomes]
rs6596560	0.89[ASN][1000 genomes]
rs6887182	0.95[ASN][1000 genomes]
rs888257	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025859	chr5:102744479-103710290	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537833	chr5:102744479-103710290	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv882524	chr5:103237745-104019292	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1027818	chr5:103318123-103445127	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1019939	chr5:103380722-103770101	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv537836	chr5:103380722-103770101	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1033278	chr5:103383207-103773361	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv882526	chr5:103390664-103478518	Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:103395600-103397000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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