Variant report

Variant	rs62364703
Chromosome Location	chr5:94355246-94355247
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62364700	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72777374	0.98[EUR][1000 genomes]
rs72777375	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94334800-94358200	Weak transcription	Stomach Mucosa	stomach
2	chr5:94340800-94362800	Weak transcription	Thymus	Thymus
3	chr5:94340800-94363000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:94344200-94363400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:94348400-94358000	Weak transcription	Dnd41	blood
6	chr5:94349000-94363000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:94349800-94355800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:94350200-94358200	Weak transcription	Primary T cells from cord blood	blood
10	chr5:94350600-94358800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:94352600-94363200	Weak transcription	Adipose Nuclei	Adipose
12	chr5:94352800-94362800	Weak transcription	Primary B cells from cord blood	blood
13	chr5:94353200-94355400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr5:94353200-94355600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:94353200-94358400	Weak transcription	Fetal Thymus	thymus
16	chr5:94353200-94358800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:94353200-94362800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr5:94354200-94355400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:94354400-94356400	Enhancers	Primary hematopoietic stem cells	blood
20	chr5:94354600-94356800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:94354800-94358800	Enhancers	GM12878-XiMat	blood
22	chr5:94355000-94355600	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr5:94355000-94358600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:94355200-94356800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr5:94355200-94358600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:94355200-94362800	Weak transcription	HUVEC	blood vessel

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