Variant report

Variant	rs72777375
Chromosome Location	chr5:94348786-94348787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs309805	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs309807	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62364703	0.86[AFR][1000 genomes]
rs66648054	0.84[EUR][1000 genomes]
rs67002726	0.88[EUR][1000 genomes]
rs72777377	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72777380	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72777386	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72777395	0.88[EUR][1000 genomes]
rs72779405	0.84[EUR][1000 genomes]
rs7708977	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94334800-94353400	Weak transcription	Gastric	stomach
2	chr5:94334800-94358200	Weak transcription	Stomach Mucosa	stomach
3	chr5:94339800-94349600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:94340800-94349400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:94340800-94352200	Weak transcription	Lung	lung
6	chr5:94340800-94362800	Weak transcription	Thymus	Thymus
7	chr5:94340800-94363000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:94341000-94349200	Weak transcription	Fetal Thymus	thymus
9	chr5:94341000-94349400	Weak transcription	Primary T cells from cord blood	blood
10	chr5:94341400-94349200	Weak transcription	Brain Anterior Caudate	brain
11	chr5:94343200-94349600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:94344200-94363400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr5:94344400-94352200	Weak transcription	Primary B cells from cord blood	blood
14	chr5:94345800-94353200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr5:94346400-94349600	Strong transcription	Primary hematopoietic stem cells	blood
16	chr5:94346400-94353200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr5:94346600-94350000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr5:94346600-94350800	Strong transcription	HUVEC	blood vessel
19	chr5:94346800-94348800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:94348000-94349000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:94348000-94352200	Weak transcription	Adipose Nuclei	Adipose
22	chr5:94348400-94358000	Weak transcription	Dnd41	blood
23	chr5:94348600-94348800	ZNF genes & repeats	GM12878-XiMat	blood
24	chr5:94348600-94349200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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