Variant report

Variant	rs309807
Chromosome Location	chr5:94340650-94340651
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs309805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66648054	0.82[EUR][1000 genomes]
rs67002726	0.86[EUR][1000 genomes]
rs72777375	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72777377	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72777380	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72777386	0.86[EUR][1000 genomes]
rs72777395	0.86[EUR][1000 genomes]
rs72779405	0.82[EUR][1000 genomes]
rs7708977	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94319800-94346600	Weak transcription	HUVEC	blood vessel
2	chr5:94320400-94348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:94334800-94353400	Weak transcription	Gastric	stomach
4	chr5:94334800-94358200	Weak transcription	Stomach Mucosa	stomach
5	chr5:94337400-94343200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:94337600-94341400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr5:94337800-94346800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr5:94339000-94343200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr5:94339000-94343400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr5:94339400-94341000	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr5:94339400-94341400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
12	chr5:94339600-94340800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:94339800-94340800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr5:94339800-94349600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:94340000-94340800	ZNF genes & repeats	Thymus	Thymus
16	chr5:94340000-94341000	ZNF genes & repeats	Fetal Thymus	thymus
17	chr5:94340400-94340800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:94340400-94340800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:94340400-94340800	ZNF genes & repeats	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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