Variant report

Variant	rs66648054
Chromosome Location	chr5:94359222-94359223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10515221	0.83[EUR][1000 genomes]
rs309805	0.82[EUR][1000 genomes]
rs309807	0.82[EUR][1000 genomes]
rs55698765	0.87[EUR][1000 genomes]
rs67002726	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72777375	0.84[EUR][1000 genomes]
rs72777377	0.84[EUR][1000 genomes]
rs72777380	0.84[EUR][1000 genomes]
rs72777386	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72777395	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72779405	0.92[EUR][1000 genomes]
rs72779413	0.85[EUR][1000 genomes]
rs72779415	0.85[EUR][1000 genomes]
rs72779419	0.85[EUR][1000 genomes]
rs72779421	0.85[EUR][1000 genomes]
rs72779422	0.83[EUR][1000 genomes]
rs7708977	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94340800-94362800	Weak transcription	Thymus	Thymus
2	chr5:94340800-94363000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:94344200-94363400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:94349000-94363000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:94352600-94363200	Weak transcription	Adipose Nuclei	Adipose
7	chr5:94352800-94362800	Weak transcription	Primary B cells from cord blood	blood
8	chr5:94353200-94362800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr5:94355200-94362800	Weak transcription	HUVEC	blood vessel
10	chr5:94357800-94360000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:94358000-94359800	Enhancers	Dnd41	blood
12	chr5:94358200-94359400	Enhancers	Primary T cells from cord blood	blood
13	chr5:94358200-94360200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr5:94358400-94359400	Enhancers	Fetal Thymus	thymus
15	chr5:94358400-94359800	Enhancers	Primary hematopoietic stem cells	blood
16	chr5:94358400-94360000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr5:94358400-94360400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr5:94358800-94359400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:94358800-94359400	Flanking Active TSS	GM12878-XiMat	blood
20	chr5:94358800-94359600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr5:94358800-94360400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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