Variant report

Variant	rs10515221
Chromosome Location	chr5:94404179-94404180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55698765	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56005052	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56284969	0.81[EUR][1000 genomes]
rs56388311	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66648054	0.83[EUR][1000 genomes]
rs67002726	0.86[EUR][1000 genomes]
rs72777386	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72777395	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72779405	0.86[EUR][1000 genomes]
rs72779413	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72779415	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72779419	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72779421	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72779422	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72779432	0.88[EUR][1000 genomes]
rs72779439	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10515221	VAV3	trans	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
3	chr5:94398200-94404800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:94399800-94404200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:94399800-94411400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:94400000-94404600	Weak transcription	Brain Anterior Caudate	brain
7	chr5:94400000-94405800	Weak transcription	Fetal Stomach	stomach
8	chr5:94402800-94405800	Weak transcription	Lung	lung
9	chr5:94403400-94408000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr5:94403800-94406400	Enhancers	Primary hematopoietic stem cells	blood
11	chr5:94404000-94404200	Active TSS	GM12878-XiMat	blood
12	chr5:94404000-94404400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:94404000-94404600	Active TSS	NHDF-Ad	bronchial
14	chr5:94404000-94404800	Active TSS	Adipose Nuclei	Adipose
15	chr5:94404000-94405600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr5:94404000-94407000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr5:94404000-94407600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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