Variant report

Variant	rs56005052
Chromosome Location	chr5:94415114-94415115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10515221	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55698765	0.88[EUR][1000 genomes]
rs56180405	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56284969	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56388311	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72777386	0.81[AMR][1000 genomes]
rs72777395	0.81[AMR][1000 genomes]
rs72779413	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72779415	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72779419	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72779421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72779422	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72779432	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72779439	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72779444	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94404600-94416200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:94406600-94415800	Weak transcription	Fetal Stomach	stomach
3	chr5:94407000-94417200	Weak transcription	Gastric	stomach
4	chr5:94407000-94423600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:94407600-94415600	Weak transcription	Primary B cells from cord blood	blood
6	chr5:94411600-94415200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:94411600-94415800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:94412200-94415800	Active TSS	Adipose Nuclei	Adipose
9	chr5:94412400-94417200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:94413400-94415400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr5:94413600-94418200	Active TSS	Brain Anterior Caudate	brain
12	chr5:94413800-94417400	Active TSS	GM12878-XiMat	blood
13	chr5:94414200-94417800	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr5:94414400-94417400	Active TSS	HUVEC	blood vessel
15	chr5:94414400-94417600	Active TSS	Duodenum Mucosa	Duodenum
16	chr5:94414600-94415200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:94414600-94415800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:94414600-94415800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:94414600-94415800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr5:94414600-94416200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:94414600-94417600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:94414800-94415200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
23	chr5:94414800-94415200	Flanking Active TSS	Hela-S3	cervix
24	chr5:94414800-94416400	Flanking Active TSS	Dnd41	blood
25	chr5:94414800-94417400	Active TSS	Muscle Satellite Cultured Cells	--
26	chr5:94415000-94415200	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr5:94415000-94415200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr5:94415000-94415400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr5:94415000-94415800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:94415000-94415800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:94415000-94415800	Enhancers	Thymus	Thymus
32	chr5:94415000-94416600	Flanking Active TSS	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links