Variant report

Variant	rs72779413
Chromosome Location	chr5:94404679-94404680
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10515221	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55698765	0.98[EUR][1000 genomes]
rs56005052	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56284969	0.82[EUR][1000 genomes]
rs56388311	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66648054	0.85[EUR][1000 genomes]
rs67002726	0.88[EUR][1000 genomes]
rs72777386	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72777395	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72779405	0.88[EUR][1000 genomes]
rs72779415	1.00[EUR][1000 genomes]
rs72779419	1.00[EUR][1000 genomes]
rs72779421	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72779422	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72779432	0.90[EUR][1000 genomes]
rs72779439	0.82[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94398200-94404800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:94399800-94411400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:94400000-94405800	Weak transcription	Fetal Stomach	stomach
5	chr5:94402800-94405800	Weak transcription	Lung	lung
6	chr5:94403400-94408000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:94403800-94406400	Enhancers	Primary hematopoietic stem cells	blood
8	chr5:94404000-94404800	Active TSS	Adipose Nuclei	Adipose
9	chr5:94404000-94405600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:94404000-94407000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr5:94404000-94407600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr5:94404200-94404800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:94404200-94404800	Enhancers	Primary B cells from cord blood	blood
14	chr5:94404200-94405000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:94404200-94405200	Enhancers	Dnd41	blood
16	chr5:94404200-94405200	Flanking Active TSS	GM12878-XiMat	blood
17	chr5:94404200-94406800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:94404400-94405000	Enhancers	Brain Germinal Matrix	brain
19	chr5:94404400-94407000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:94404600-94405600	Weak transcription	HUVEC	blood vessel
21	chr5:94404600-94405800	Enhancers	Brain Anterior Caudate	brain
22	chr5:94404600-94416200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links